-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_4915711-5062038

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.78783_t
Valid prediction for snap_scaffold_19-snap.1063-T1
Valid prediction for GeneMark_model.78762_t
Valid prediction for GeneMark_model.78779_t
Valid prediction for GeneMark_model.78750_t
Valid prediction for snap_scaffold_19-snap.1053-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GeneMark_model.78777_t
Valid prediction for GlimmerHMM_glimmerT_45092-T1
Valid prediction for snap_scaffold_19-snap.1067-T1
Valid prediction for GlimmerHMM_glimmerT_45081-T1
Valid prediction for Augustus_model.g30046.t1
Valid prediction for GeneMark_model.78768_t
Valid prediction for GeneMark_model.78785_t
Valid prediction for Augustus_model.g30040.t1
Valid prediction for GlimmerHMM_glimmerT_45096-T1
Valid prediction for snap_scaffold_19-snap.1055-T1
Valid prediction for snap_scaffold_19-snap.1057-T1
Valid prediction for GeneMark_model.78757_t
Valid prediction for snap_scaffold_19-snap.1050-T1
Valid prediction for GlimmerHMM_glimmerT_45097-T1
Valid prediction for snap_scaffold_19-snap.1052-T1
Valid prediction for Augustus_model.g30049.t1
Valid prediction for snap_scaffold_19-snap.1060-T1
Valid prediction for GlimmerHMM_glimmerT_45079-T1
Valid prediction for GlimmerHMM_glimmerT_45084-T1
Valid prediction for GeneMark_model.78767_t
Valid prediction for pasa_asmbl_22148.p1
Valid prediction for snap_scaffold_19-snap.1059-T1
Valid prediction for GeneMark_model.78773_t
Valid prediction for snap_scaffold_19-snap.1046-T1
Valid prediction for Augustus_model.g30048.t1
Valid prediction for CodingQuarry_transcript_25593-T1
Valid prediction for GeneMark_model.78775_t
Valid prediction for GeneMark_model.78771_t
Valid prediction for GlimmerHMM_glimmerT_45086-T1
Valid prediction for GeneMark_model.78759_t
Valid prediction for snap_scaffold_19-snap.1066-T1
Valid prediction for snap_scaffold_19-snap.1070-T1
Valid prediction for GlimmerHMM_glimmerT_45089-T1
Valid prediction for GlimmerHMM_glimmerT_45083-T1
Valid prediction for snap_scaffold_19-snap.1047-T1
Valid prediction for HiQ_model.g30045.t1
Valid prediction for GeneMark_model.78764_t
Valid prediction for GeneMark_model.78780_t
Valid prediction for GeneMark_model.78755_t
Valid prediction for snap_scaffold_19-snap.1071-T1
Valid prediction for GlimmerHMM_glimmerT_45088-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.78763_t
Valid prediction for Augustus_model.g30047.t1
Valid prediction for GeneMark_model.78778_t
Valid prediction for GeneMark_model.78769_t
Valid prediction for CodingQuarry_transcript_25592-T1
Valid prediction for snap_scaffold_19-snap.1074-T1
Valid prediction for GeneMark_model.78782_t
Valid prediction for snap_scaffold_19-snap.1049-T1
Valid prediction for GlimmerHMM_glimmerT_45098-T1
Valid prediction for snap_scaffold_19-snap.1054-T1
Valid prediction for snap_scaffold_19-snap.1072-T1
Valid prediction for GlimmerHMM_glimmerT_45095-T1
Valid prediction for GeneMark_model.78770_t
Valid prediction for GlimmerHMM_glimmerT_45090-T1
Valid prediction for GeneMark_model.78752_t
Valid prediction for GeneMark_model.78751_t
Valid prediction for GlimmerHMM_glimmerT_45077-T1
Valid prediction for snap_scaffold_19-snap.1073-T1
Valid prediction for snap_scaffold_19-snap.1045-T1
Valid prediction for Augustus_model.g30050.t1
Valid prediction for snap_scaffold_19-snap.1051-T1
Valid prediction for snap_scaffold_19-snap.1065-T1
Valid prediction for GeneMark_model.78760_t
Valid prediction for GlimmerHMM_glimmerT_45085-T1
Valid prediction for Augustus_model.g30041.t1
Valid prediction for snap_scaffold_19-snap.1048-T1
Valid prediction for Augustus_model.g30052.t1
Valid prediction for GlimmerHMM_glimmerT_45078-T1
Valid prediction for Augustus_model.g30042.t1
Valid prediction for GeneMark_model.78761_t
Valid prediction for GeneMark_model.78774_t
Valid prediction for GlimmerHMM_glimmerT_45082-T1
Valid prediction for Augustus_model.g30053.t1
Valid prediction for GlimmerHMM_glimmerT_45087-T1
Valid prediction for GeneMark_model.78765_t
Valid prediction for Augustus_model.g30051.t1
Valid prediction for GeneMark_model.78753_t
Valid prediction for snap_scaffold_19-snap.1068-T1
Valid prediction for GlimmerHMM_glimmerT_45080-T1
Valid prediction for GeneMark_model.78766_t
Valid prediction for snap_scaffold_19-snap.1061-T1
Valid prediction for Augustus_model.g30044.t1
Valid prediction for snap_scaffold_19-snap.1064-T1
Valid prediction for GeneMark_model.78776_t
Valid prediction for GlimmerHMM_glimmerT_45093-T1
Valid prediction for GeneMark_model.78772_t
Valid prediction for HiQ_model.g30043.t1
Valid prediction for snap_scaffold_19-snap.1069-T1
Valid prediction for snap_scaffold_19-snap.1062-T1
Valid prediction for GeneMark_model.78756_t
Valid prediction for GlimmerHMM_glimmerT_45094-T1
Valid prediction for GlimmerHMM_glimmerT_45091-T1
Valid prediction for GeneMark_model.78754_t
Valid prediction for Augustus_model.g30039.t1
Valid prediction for GeneMark_model.78781_t
Valid prediction for GeneMark_model.78784_t
Valid prediction for snap_scaffold_19-snap.1056-T1
Valid prediction for snap_scaffold_19-snap.1058-T1
Valid prediction for pasa_asmbl_21347.p1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10985, rend_intergenic: 2939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19293, rend_intergenic: 17064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30734, rend_intergenic: 27967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71358, rend_intergenic: 67970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90389, rend_intergenic: 87627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108326, rend_intergenic: 105231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 146328
-exon list size: 426


building trellis

0.2    
0.5    
0.7    
0.9    
1.2    
1.4    
1.6    
1.9    
2.1    
2.3    
2.6    
2.8    
3.0    
3.3    
3.5    
3.7    
4.0    
4.2    
4.4    
4.7    
4.9    
5.1    
5.4    
5.6    
5.8    
6.1    
6.3    
6.5    
6.8    
7.0    
7.2    
7.5    
7.7    
7.9    
8.2    
8.4    
8.6    
8.9    
9.1    
9.3    
9.6    
9.8    
10.0    
10.3    
10.5    
10.7    
11.0    
11.2    
11.4    
11.7    
11.9    
12.1    
12.4    
12.6    
12.9    
13.1    
13.3    
13.6    
13.8    
14.0    
14.3    
14.5    
14.7    
15.0    
15.2    
15.4    
15.7    
15.9    
16.1    
16.4    
16.6    
16.8    
17.1    
17.3    
17.5    
17.8    
18.0    
18.2    
18.5    
18.7    
18.9    
19.2    
19.4    
19.6    
19.9    
20.1    
20.3    
20.6    
20.8    
21.0    
21.3    
21.5    
21.7    
22.0    
22.2    
22.4    
22.7    
22.9    
23.1    
23.4    
23.6    
23.8    
24.1    
24.3    
24.5    
24.8    
25.0    
25.2    
25.5    
25.7    
25.9    
26.2    
26.4    
26.6    
26.9    
27.1    
27.3    
27.6    
27.8    
28.0    
28.3    
28.5    
28.7    
29.0    
29.2    
29.4    
29.7    
29.9    
30.1    
30.4    
30.6    
30.8    
31.1    
31.3    
31.5    
31.8    
32.0    
32.2    
32.5    
32.7    
32.9    
33.2    
33.4    
33.6    
33.9    
34.1    
34.3    
34.6    
34.8    
35.0    
35.3    
35.5    
35.7    
36.0    
36.2    
36.4    
36.7    
36.9    
37.1    
37.4    
37.6    
37.9    
38.1    
38.3    
38.6    
38.8    
39.0    
39.3    
39.5    
39.7    
40.0    
40.2    
40.4    
40.7    
40.9    
41.1    
41.4    
41.6    
41.8    
42.1    
42.3    
42.5    
42.8    
43.0    
43.2    
43.5    
43.7    
43.9    
44.2    
44.4    
44.6    
44.9    
45.1    
45.3    
45.6    
45.8    
46.0    
46.3    
46.5    
46.7    
47.0    
47.2    
47.4    
47.7    
47.9    
48.1    
48.4    
48.6    
48.8    
49.1    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
50.9    
51.2    
51.4    
51.6    
51.9    
52.1    
52.3    
52.6    
52.8    
53.0    
53.3    
53.5    
53.7    
54.0    
54.2    
54.4    
54.7    
54.9    
55.1    
55.4    
55.6    
55.8    
56.1    
56.3    
56.5    
56.8    
57.0    
57.2    
57.5    
57.7    
57.9    
58.2    
58.4    
58.6    
58.9    
59.1    
59.3    
59.6    
59.8    
60.0    
60.3    
60.5    
60.7    
61.0    
61.2    
61.4    
61.7    
61.9    
62.1    
62.4    
62.6    
62.9    
63.1    
63.3    
63.6    
63.8    
64.0    
64.3    
64.5    
64.7    
65.0    
65.2    
65.4    
65.7    
65.9    
66.1    
66.4    
66.6    
66.8    
67.1    
67.3    
67.5    
67.8    
68.0    
68.2    
68.5    
68.7    
68.9    
69.2    
69.4    
69.6    
69.9    
70.1    
70.3    
70.6    
70.8    
71.0    
71.3    
71.5    
71.7    
72.0    
72.2    
72.4    
72.7    
72.9    
73.1    
73.4    
73.6    
73.8    
74.1    
74.3    
74.5    
74.8    
75.0    
75.2    
75.5    
75.7    
75.9    
76.2    
76.4    
76.6    
76.9    
77.1    
77.3    
77.6    
77.8    
78.0    
78.3    
78.5    
78.7    
79.0    
79.2    
79.4    
79.7    
79.9    
80.1    
80.4    
80.6    
80.8    
81.1    
81.3    
81.5    
81.8    
82.0    
82.2    
82.5    
82.7    
82.9    
83.2    
83.4    
83.6    
83.9    
84.1    
84.3    
84.6    
84.8    
85.0    
85.3    
85.5    
85.7    
86.0    
86.2    
86.4    
86.7    
86.9    
87.1    
87.4    
87.6    
87.9    
88.1    
88.3    
88.6    
88.8    
89.0    
89.3    
89.5    
89.7    
90.0    
90.2    
90.4    
90.7    
90.9    
91.1    
91.4    
91.6    
91.8    
92.1    
92.3    
92.5    
92.8    
93.0    
93.2    
93.5    
93.7    
93.9    
94.2    
94.4    
94.6    
94.9    
95.1    
95.3    
95.6    
95.8    
96.0    
96.3    
96.5    
96.7    
97.0    
97.2    
97.4    
97.7    
97.9    
98.1    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 10985, rend_intergenic: 2939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19293, rend_intergenic: 17064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30734, rend_intergenic: 27967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71358, rend_intergenic: 67970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90389, rend_intergenic: 87627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108326, rend_intergenic: 105231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support