-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_4705005-4917748

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_19-snap.1017-T1
Valid prediction for GeneMark_model.78730_t
Couldn't classify 163009, 163195
Sorry, prediction pasa_asmbl_22145.p1 fails validation.
(GTT)	 AT	163009-163195	GT	CGG
(CAA)	 AG	163301-163374	GT	AGG
(ATC)	 AG	163598-163732	CA	GAC
-recovered pasa_asmbl_22145.p1, terminal, 163598, 163732
-recovered pasa_asmbl_22145.p1, internal, 163301, 163374
Valid prediction for GlimmerHMM_glimmerT_45067-T1
Valid prediction for snap_scaffold_19-snap.1013-T1
Valid prediction for snap_scaffold_19-snap.1018-T1
Valid prediction for GeneMark_model.78711_t
Couldn't classify 158375, 158418
Sorry, prediction pasa_asmbl_22146.p1 fails validation.
(GTT)	 CT	158375-158418	GT	GTG
(CGA)	 AG	160949-161143	GT	GAG
(ATA)	 AG	161414-161468	GT	AGG
(GGC)	 AG	161697-161793	GT	TGG
(CTT)	 AG	161930-161988	GT	AAG
(TCT)	 AG	163123-163195	GT	CGG
(CAA)	 AG	163301-163374	GT	AGG
(ATC)	 AG	163598-163732	CA	GAC
-recovered pasa_asmbl_22146.p1, terminal, 163598, 163732
-recovered pasa_asmbl_22146.p1, internal, 160949, 161143
-recovered pasa_asmbl_22146.p1, internal, 161414, 161468
-recovered pasa_asmbl_22146.p1, internal, 161697, 161793
-recovered pasa_asmbl_22146.p1, internal, 161930, 161988
-recovered pasa_asmbl_22146.p1, internal, 163123, 163195
-recovered pasa_asmbl_22146.p1, internal, 163301, 163374
Valid prediction for snap_scaffold_19-snap.1032-T1
Valid prediction for snap_scaffold_19-snap.1024-T1
Valid prediction for GeneMark_model.78742_t
Valid prediction for GeneMark_model.78744_t
Valid prediction for GlimmerHMM_glimmerT_45062-T1
Valid prediction for GeneMark_model.78722_t
Valid prediction for GeneMark_model.78707_t
Valid prediction for GeneMark_model.78726_t
Valid prediction for Augustus_model.g30034.t1
Valid prediction for GlimmerHMM_glimmerT_45055-T1
Valid prediction for GeneMark_model.78704_t
Valid prediction for snap_scaffold_19-snap.1019-T1
Valid prediction for GeneMark_model.78747_t
Valid prediction for GeneMark_model.78716_t
Valid prediction for snap_scaffold_19-snap.1040-T1
Valid prediction for Augustus_model.g30038.t1
Valid prediction for GlimmerHMM_glimmerT_45071-T1
Valid prediction for GeneMark_model.78693_t
Valid prediction for Augustus_model.g30025.t1
Valid prediction for GeneMark_model.78698_t
Valid prediction for GeneMark_model.78749_t
Valid prediction for GeneMark_model.78714_t
Valid prediction for GlimmerHMM_glimmerT_45074-T1
Valid prediction for snap_scaffold_19-snap.1044-T1
Valid prediction for CodingQuarry_transcript_25590-T1
Valid prediction for Augustus_model.g30023.t1
Valid prediction for Augustus_model.g30033.t1
Valid prediction for snap_scaffold_19-snap.1038-T1
Valid prediction for Augustus_model.g30027.t1
Valid prediction for GlimmerHMM_glimmerT_45052-T1
Valid prediction for snap_scaffold_19-snap.1037-T1
Valid prediction for snap_scaffold_19-snap.1036-T1
Valid prediction for GeneMark_model.78732_t
Valid prediction for GeneMark_model.78706_t
Valid prediction for CodingQuarry_transcript_25591-T1
Valid prediction for GlimmerHMM_glimmerT_45058-T1
Valid prediction for GeneMark_model.78717_t
Valid prediction for Augustus_model.g30024.t1
Valid prediction for GlimmerHMM_glimmerT_45048-T1
Valid prediction for GlimmerHMM_glimmerT_45057-T1
Valid prediction for GeneMark_model.78728_t
Valid prediction for snap_scaffold_19-snap.1031-T1
Valid prediction for GlimmerHMM_glimmerT_45056-T1
Valid prediction for GeneMark_model.78720_t
Valid prediction for HiQ_model.g30030.t1
Valid prediction for GeneMark_model.78718_t
Valid prediction for Augustus_model.g30020.t1
Valid prediction for GlimmerHMM_glimmerT_45068-T1
Valid prediction for GeneMark_model.78734_t
Valid prediction for snap_scaffold_19-snap.1025-T1
Valid prediction for Augustus_model.g30035.t1
Valid prediction for GeneMark_model.78745_t
Valid prediction for snap_scaffold_19-snap.1028-T1
Valid prediction for GeneMark_model.78700_t
Valid prediction for snap_scaffold_19-snap.1030-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.78703_t
Valid prediction for GeneMark_model.78702_t
Valid prediction for GeneMark_model.78740_t
Valid prediction for GeneMark_model.78723_t
Valid prediction for snap_scaffold_19-snap.1034-T1
Valid prediction for snap_scaffold_19-snap.1020-T1
Valid prediction for snap_scaffold_19-snap.1012-T1
Valid prediction for GlimmerHMM_glimmerT_45054-T1
Valid prediction for GlimmerHMM_glimmerT_45070-T1
Valid prediction for snap_scaffold_19-snap.1029-T1
Valid prediction for pasa_asmbl_22143.p1
Valid prediction for GlimmerHMM_glimmerT_45073-T1
Valid prediction for Augustus_model.g30037.t1
Valid prediction for GeneMark_model.78696_t
Valid prediction for Augustus_model.g30026.t1
Valid prediction for GlimmerHMM_glimmerT_45075-T1
Valid prediction for Augustus_model.g30036.t1
Valid prediction for snap_scaffold_19-snap.1010-T1
Valid prediction for GeneMark_model.78691_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.1023-T1
Valid prediction for snap_scaffold_19-snap.1022-T1
Valid prediction for snap_scaffold_19-snap.1014-T1
Valid prediction for Augustus_model.g30021.t1
Valid prediction for GeneMark_model.78715_t
Valid prediction for snap_scaffold_19-snap.1009-T1
Valid prediction for GeneMark_model.78701_t
Valid prediction for Augustus_model.g30022.t1
Valid prediction for GlimmerHMM_glimmerT_45049-T1
Valid prediction for GlimmerHMM_glimmerT_45060-T1
Valid prediction for GeneMark_model.78748_t
Valid prediction for snap_scaffold_19-snap.1035-T1
Valid prediction for GeneMark_model.78694_t
Valid prediction for GeneMark_model.78743_t
Valid prediction for GlimmerHMM_glimmerT_45061-T1
Valid prediction for GeneMark_model.78741_t
Valid prediction for GeneMark_model.78739_t
Valid prediction for HiQ_model.g30031.t1
Valid prediction for CodingQuarry_transcript_25588-T1
Valid prediction for GeneMark_model.78719_t
Valid prediction for GlimmerHMM_glimmerT_45065-T1
Valid prediction for snap_scaffold_19-snap.1008-T1
Valid prediction for GlimmerHMM_glimmerT_45069-T1
Valid prediction for Augustus_model.g30019.t1
Valid prediction for GeneMark_model.78712_t
Valid prediction for snap_scaffold_19-snap.1015-T1
Valid prediction for snap_scaffold_19-snap.1041-T1
Valid prediction for GlimmerHMM_glimmerT_45050-T1
Valid prediction for snap_scaffold_19-snap.1006-T1
Valid prediction for snap_scaffold_19-snap.1026-T1
Valid prediction for snap_scaffold_19-snap.1011-T1
Valid prediction for snap_scaffold_19-snap.1027-T1
Valid prediction for GeneMark_model.78746_t
Valid prediction for GlimmerHMM_glimmerT_45064-T1
Valid prediction for GeneMark_model.78699_t
Valid prediction for snap_scaffold_19-snap.1043-T1
Couldn't classify 92564, 92704
Sorry, prediction pasa_asmbl_21345.p1 fails validation.
(ATG)	 CT	88072-88171	GT	AGG
(GGA)	 AG	88296-88340	GT	GTG
(CCT)	 AG	88513-88631	GT	AGG
(GGC)	 AG	88841-88957	GT	CGG
(ATG)	 AG	89155-89234	GT	AGG
(GTC)	 AG	89401-89512	GT	GGG
(ACG)	 AG	89614-89704	GT	AGG
(TGT)	 AG	89841-89988	GT	AGG
(AGT)	 AG	90123-90253	GT	GGG
(GTC)	 AG	90356-90460	GT	TGG
(ACC)	 AG	90568-90676	GT	CAG
(CAG)	 AG	91907-92093	GT	AGG
(ACT)	 AG	92219-92434	GT	GGG
(GAG)	 AG	92564-92704	GG	AAG
-recovered pasa_asmbl_21345.p1, initial, 88072, 88171
-recovered pasa_asmbl_21345.p1, initial, 89155, 89234
-recovered pasa_asmbl_21345.p1, internal, 88296, 88340
-recovered pasa_asmbl_21345.p1, internal, 88513, 88631
-recovered pasa_asmbl_21345.p1, internal, 88841, 88957
-recovered pasa_asmbl_21345.p1, internal, 89155, 89234
-recovered pasa_asmbl_21345.p1, internal, 89401, 89512
-recovered pasa_asmbl_21345.p1, internal, 89614, 89704
-recovered pasa_asmbl_21345.p1, internal, 89841, 89988
-recovered pasa_asmbl_21345.p1, internal, 90123, 90253
-recovered pasa_asmbl_21345.p1, internal, 90356, 90460
-recovered pasa_asmbl_21345.p1, internal, 90568, 90676
-recovered pasa_asmbl_21345.p1, internal, 91907, 92093
-recovered pasa_asmbl_21345.p1, internal, 92219, 92434
Valid prediction for GeneMark_model.78697_t
Valid prediction for GeneMark_model.78724_t
Valid prediction for GeneMark_model.78713_t
Valid prediction for snap_scaffold_19-snap.1033-T1
Valid prediction for GeneMark_model.78721_t
Valid prediction for GlimmerHMM_glimmerT_45066-T1
Valid prediction for snap_scaffold_19-snap.1004-T1
Valid prediction for snap_scaffold_19-snap.1005-T1
Valid prediction for snap_scaffold_19-snap.1016-T1
Valid prediction for GeneMark_model.78731_t
Valid prediction for CodingQuarry_transcript_25589-T1
Valid prediction for GeneMark_model.78725_t
Valid prediction for GlimmerHMM_glimmerT_45072-T1
Valid prediction for GeneMark_model.78733_t
Couldn't classify 98197, 98370
Couldn't classify 99785, 99937
Sorry, prediction pasa_asmbl_21344.p1 fails validation.
(GGC)	 TA	98197-98370	GT	CGG
(CTG)	 AG	98530-98653	GT	CGG
(GTG)	 AG	98802-99069	GT	AAG
(GTT)	 AG	99222-99319	GT	CTG
(GTC)	 AG	99446-99558	GT	AGG
(ATC)	 AG	99785-99937	AG	GCA
-recovered pasa_asmbl_21344.p1, internal, 98530, 98653
-recovered pasa_asmbl_21344.p1, internal, 98802, 99069
-recovered pasa_asmbl_21344.p1, internal, 99222, 99319
-recovered pasa_asmbl_21344.p1, internal, 99446, 99558
Valid prediction for snap_scaffold_19-snap.1007-T1
Valid prediction for GlimmerHMM_glimmerT_45051-T1
Valid prediction for GeneMark_model.78729_t
Valid prediction for GeneMark_model.78708_t
Valid prediction for GlimmerHMM_glimmerT_45053-T1
Valid prediction for GeneMark_model.78738_t
Valid prediction for GeneMark_model.78727_t
Valid prediction for GlimmerHMM_glimmerT_45059-T1
Valid prediction for pasa_asmbl_21340.p1
Valid prediction for Augustus_model.g30032.t1
Valid prediction for Augustus_model.g30029.t1
Valid prediction for GeneMark_model.78737_t
Valid prediction for snap_scaffold_19-snap.1039-T1
Couldn't classify 122484, 123655
Sorry, prediction pasa_asmbl_21339.p1 fails validation.
(ATG)	 AC	114224-114261	GT	TGG
(GTA)	 AG	114571-114655	GT	ATG
(AGT)	 AG	115130-115195	GT	AGG
(TTG)	 AG	116165-116325	GT	AGG
(TTT)	 AG	118894-119035	GT	GGG
(AGC)	 AG	119236-119307	GT	AGG
(AAG)	 AG	119585-119734	GT	AGG
(GGT)	 AG	119878-120039	GT	TGG
(GTG)	 AG	121584-121758	GT	AGG
(GGC)	 AG	122252-122371	GT	TGG
(AAC)	 AG	122484-123655	GT	AGG
-recovered pasa_asmbl_21339.p1, initial, 114224, 114261
-recovered pasa_asmbl_21339.p1, internal, 114571, 114655
-recovered pasa_asmbl_21339.p1, internal, 115130, 115195
-recovered pasa_asmbl_21339.p1, internal, 116165, 116325
-recovered pasa_asmbl_21339.p1, internal, 118894, 119035
-recovered pasa_asmbl_21339.p1, internal, 119236, 119307
-recovered pasa_asmbl_21339.p1, internal, 119585, 119734
-recovered pasa_asmbl_21339.p1, internal, 119878, 120039
-recovered pasa_asmbl_21339.p1, internal, 121584, 121758
-recovered pasa_asmbl_21339.p1, internal, 122252, 122371
-recovered pasa_asmbl_21339.p1, internal, 122484, 123655
Valid prediction for snap_scaffold_19-snap.1042-T1
Valid prediction for GeneMark_model.78692_t
Valid prediction for GlimmerHMM_glimmerT_45076-T1
Valid prediction for snap_scaffold_19-snap.1021-T1
Valid prediction for GeneMark_model.78710_t
Valid prediction for GeneMark_model.78735_t
Valid prediction for GeneMark_model.78695_t
Valid prediction for GlimmerHMM_glimmerT_45063-T1
Valid prediction for GeneMark_model.78705_t
Valid prediction for Augustus_model.g30028.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 34517, rend_intergenic: 32934  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36865, rend_intergenic: 34598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49546, rend_intergenic: 39834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63585, rend_intergenic: 50341  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97627, rend_intergenic: 92162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127987, rend_intergenic: 111113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163732, rend_intergenic: 153402  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172225, rend_intergenic: 170430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198168, rend_intergenic: 196718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202878, rend_intergenic: 200238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210848, rend_intergenic: 208925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 212744
-exon list size: 746


building trellis

0.1    
0.3    
0.4    
0.5    
0.7    
0.8    
0.9    
1.1    
1.2    
1.3    
1.5    
1.6    
1.7    
1.9    
2.0    
2.1    
2.3    
2.4    
2.5    
2.7    
2.8    
2.9    
3.1    
3.2    
3.3    
3.5    
3.6    
3.7    
3.9    
4.0    
4.1    
4.3    
4.4    
4.5    
4.7    
4.8    
4.9    
5.1    
5.2    
5.3    
5.5    
5.6    
5.7    
5.9    
6.0    
6.1    
6.3    
6.4    
6.6    
6.7    
6.8    
7.0    
7.1    
7.2    
7.4    
7.5    
7.6    
7.8    
7.9    
8.0    
8.2    
8.3    
8.4    
8.6    
8.7    
8.8    
9.0    
9.1    
9.2    
9.4    
9.5    
9.6    
9.8    
9.9    
10.0    
10.2    
10.3    
10.4    
10.6    
10.7    
10.8    
11.0    
11.1    
11.2    
11.4    
11.5    
11.6    
11.8    
11.9    
12.0    
12.2    
12.3    
12.4    
12.6    
12.7    
12.8    
13.0    
13.1    
13.2    
13.4    
13.5    
13.6    
13.8    
13.9    
14.0    
14.2    
14.3    
14.4    
14.6    
14.7    
14.8    
15.0    
15.1    
15.2    
15.4    
15.5    
15.6    
15.8    
15.9    
16.0    
16.2    
16.3    
16.4    
16.6    
16.7    
16.8    
17.0    
17.1    
17.2    
17.4    
17.5    
17.6    
17.8    
17.9    
18.0    
18.2    
18.3    
18.4    
18.6    
18.7    
18.9    
19.0    
19.1    
19.3    
19.4    
19.5    
19.7    
19.8    
19.9    
20.1    
20.2    
20.3    
20.5    
20.6    
20.7    
20.9    
21.0    
21.1    
21.3    
21.4    
21.5    
21.7    
21.8    
21.9    
22.1    
22.2    
22.3    
22.5    
22.6    
22.7    
22.9    
23.0    
23.1    
23.3    
23.4    
23.5    
23.7    
23.8    
23.9    
24.1    
24.2    
24.3    
24.5    
24.6    
24.7    
24.9    
25.0    
25.1    
25.3    
25.4    
25.5    
25.7    
25.8    
25.9    
26.1    
26.2    
26.3    
26.5    
26.6    
26.7    
26.9    
27.0    
27.1    
27.3    
27.4    
27.5    
27.7    
27.8    
27.9    
28.1    
28.2    
28.3    
28.5    
28.6    
28.7    
28.9    
29.0    
29.1    
29.3    
29.4    
29.5    
29.7    
29.8    
29.9    
30.1    
30.2    
30.3    
30.5    
30.6    
30.7    
30.9    
31.0    
31.1    
31.3    
31.4    
31.6    
31.7    
31.8    
32.0    
32.1    
32.2    
32.4    
32.5    
32.6    
32.8    
32.9    
33.0    
33.2    
33.3    
33.4    
33.6    
33.7    
33.8    
34.0    
34.1    
34.2    
34.4    
34.5    
34.6    
34.8    
34.9    
35.0    
35.2    
35.3    
35.4    
35.6    
35.7    
35.8    
36.0    
36.1    
36.2    
36.4    
36.5    
36.6    
36.8    
36.9    
37.0    
37.2    
37.3    
37.4    
37.6    
37.7    
37.8    
38.0    
38.1    
38.2    
38.4    
38.5    
38.6    
38.8    
38.9    
39.0    
39.2    
39.3    
39.4    
39.6    
39.7    
39.8    
40.0    
40.1    
40.2    
40.4    
40.5    
40.6    
40.8    
40.9    
41.0    
41.2    
41.3    
41.4    
41.6    
41.7    
41.8    
42.0    
42.1    
42.2    
42.4    
42.5    
42.6    
42.8    
42.9    
43.0    
43.2    
43.3    
43.4    
43.6    
43.7    
43.9    
44.0    
44.1    
44.3    
44.4    
44.5    
44.7    
44.8    
44.9    
45.1    
45.2    
45.3    
45.5    
45.6    
45.7    
45.9    
46.0    
46.1    
46.3    
46.4    
46.5    
46.7    
46.8    
46.9    
47.1    
47.2    
47.3    
47.5    
47.6    
47.7    
47.9    
48.0    
48.1    
48.3    
48.4    
48.5    
48.7    
48.8    
48.9    
49.1    
49.2    
49.3    
49.5    
49.6    
49.7    
49.9    
50.0    
50.1    
50.3    
50.4    
50.5    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
51.5    
51.6    
51.7    
51.9    
52.0    
52.1    
52.3    
52.4    
52.5    
52.7    
52.8    
52.9    
53.1    
53.2    
53.3    
53.5    
53.6    
53.7    
53.9    
54.0    
54.1    
54.3    
54.4    
54.5    
54.7    
54.8    
54.9    
55.1    
55.2    
55.3    
55.5    
55.6    
55.7    
55.9    
56.0    
56.1    
56.3    
56.4    
56.6    
56.7    
56.8    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.8    
57.9    
58.0    
58.2    
58.3    
58.4    
58.6    
58.7    
58.8    
59.0    
59.1    
59.2    
59.4    
59.5    
59.6    
59.8    
59.9    
60.0    
60.2    
60.3    
60.4    
60.6    
60.7    
60.8    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.6    
62.7    
62.8    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.2    
64.3    
64.4    
64.6    
64.7    
64.8    
65.0    
65.1    
65.2    
65.4    
65.5    
65.6    
65.8    
65.9    
66.0    
66.2    
66.3    
66.4    
66.6    
66.7    
66.8    
67.0    
67.1    
67.2    
67.4    
67.5    
67.6    
67.8    
67.9    
68.0    
68.2    
68.3    
68.4    
68.6    
68.7    
68.9    
69.0    
69.1    
69.3    
69.4    
69.5    
69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.5    
70.6    
70.7    
70.9    
71.0    
71.1    
71.3    
71.4    
71.5    
71.7    
71.8    
71.9    
72.1    
72.2    
72.3    
72.5    
72.6    
72.7    
72.9    
73.0    
73.1    
73.3    
73.4    
73.5    
73.7    
73.8    
73.9    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.9    
75.0    
75.1    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.3    
77.4    
77.5    
77.7    
77.8    
77.9    
78.1    
78.2    
78.3    
78.5    
78.6    
78.7    
78.9    
79.0    
79.1    
79.3    
79.4    
79.5    
79.7    
79.8    
79.9    
80.1    
80.2    
80.3    
80.5    
80.6    
80.7    
80.9    
81.0    
81.1    
81.3    
81.4    
81.6    
81.7    
81.8    
82.0    
82.1    
82.2    
82.4    
82.5    
82.6    
82.8    
82.9    
83.0    
83.2    
83.3    
83.4    
83.6    
83.7    
83.8    
84.0    
84.1    
84.2    
84.4    
84.5    
84.6    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.4    
86.5    
86.6    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.6    
89.7    
89.8    
90.0    
90.1    
90.2    
90.4    
90.5    
90.6    
90.8    
90.9    
91.0    
91.2    
91.3    
91.4    
91.6    
91.7    
91.8    
92.0    
92.1    
92.2    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.6    
93.7    
93.9    
94.0    
94.1    
94.3    
94.4    
94.5    
94.7    
94.8    
94.9    
95.1    
95.2    
95.3    
95.5    
95.6    
95.7    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.1    
97.2    
97.3    
97.5    
97.6    
97.7    
97.9    
98.0    
98.1    
98.3    
98.4    
98.5    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 41 predictions from path traversal
Error with prediction: snap lend_intergenic: 34517, rend_intergenic: 32934  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36865, rend_intergenic: 34598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49546, rend_intergenic: 39834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63585, rend_intergenic: 50341  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97627, rend_intergenic: 92162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127987, rend_intergenic: 111113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163732, rend_intergenic: 153402  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172225, rend_intergenic: 170430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198168, rend_intergenic: 196718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202878, rend_intergenic: 200238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210848, rend_intergenic: 208925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10036
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support