-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_4535085-4708231

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.78662_t
Valid prediction for snap_scaffold_19-snap.996-T1
Valid prediction for snap_scaffold_19-snap.985-T1
Valid prediction for GeneMark_model.78661_t
Valid prediction for GeneMark_model.78665_t
Valid prediction for GeneMark_model.78681_t
Valid prediction for snap_scaffold_19-snap.986-T1
Valid prediction for GeneMark_model.78683_t
Valid prediction for GeneMark_model.78678_t
Valid prediction for GlimmerHMM_glimmerT_45029-T1
Valid prediction for GlimmerHMM_glimmerT_45026-T1
Valid prediction for Augustus_model.g30017.t1
Valid prediction for snap_scaffold_19-snap.1001-T1
Valid prediction for snap_scaffold_19-snap.987-T1
Valid prediction for snap_scaffold_19-snap.1003-T1
Valid prediction for GeneMark_model.78689_t
Valid prediction for snap_scaffold_19-snap.992-T1
Valid prediction for snap_scaffold_19-snap.981-T1
Valid prediction for GlimmerHMM_glimmerT_45031-T1
Valid prediction for GeneMark_model.78671_t
Valid prediction for snap_scaffold_19-snap.995-T1
Valid prediction for GlimmerHMM_glimmerT_45036-T1
Valid prediction for snap_scaffold_19-snap.1000-T1
Valid prediction for GeneMark_model.78675_t
Valid prediction for GeneMark_model.78666_t
Valid prediction for GlimmerHMM_glimmerT_45025-T1
Valid prediction for GlimmerHMM_glimmerT_45030-T1
Valid prediction for GeneMark_model.78676_t
Valid prediction for GeneMark_model.78679_t
Valid prediction for GlimmerHMM_glimmerT_45044-T1
Valid prediction for GlimmerHMM_glimmerT_45045-T1
Valid prediction for GeneMark_model.78673_t
Valid prediction for snap_scaffold_19-snap.984-T1
Valid prediction for GeneMark_model.78669_t
Valid prediction for snap_scaffold_19-snap.991-T1
Valid prediction for GlimmerHMM_glimmerT_45033-T1
Valid prediction for snap_scaffold_19-snap.983-T1
Valid prediction for Augustus_model.g30015.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_45037-T1
Valid prediction for GeneMark_model.78688_t
Valid prediction for GlimmerHMM_glimmerT_45041-T1
Valid prediction for GeneMark_model.78684_t
Valid prediction for snap_scaffold_19-snap.982-T1
Valid prediction for GeneMark_model.78685_t
Valid prediction for snap_scaffold_19-snap.988-T1
Valid prediction for GlimmerHMM_glimmerT_45039-T1
Valid prediction for snap_scaffold_19-snap.994-T1
Valid prediction for snap_scaffold_19-snap.1002-T1
Valid prediction for GeneMark_model.78680_t
Valid prediction for GlimmerHMM_glimmerT_45034-T1
Valid prediction for GeneMark_model.78672_t
Valid prediction for snap_scaffold_19-snap.989-T1
Valid prediction for Augustus_model.g30018.t1
Valid prediction for GeneMark_model.78690_t
Valid prediction for GlimmerHMM_glimmerT_45040-T1
Valid prediction for GeneMark_model.78686_t
Valid prediction for GeneMark_model.78667_t
Valid prediction for GlimmerHMM_glimmerT_45042-T1
Valid prediction for GlimmerHMM_glimmerT_45043-T1
Valid prediction for Augustus_model.g30016.t1
Valid prediction for GlimmerHMM_glimmerT_45038-T1
Valid prediction for GeneMark_model.78674_t
Valid prediction for GeneMark_model.78687_t
Valid prediction for GlimmerHMM_glimmerT_45032-T1
Valid prediction for GeneMark_model.78664_t
Valid prediction for snap_scaffold_19-snap.998-T1
Valid prediction for snap_scaffold_19-snap.999-T1
Valid prediction for GeneMark_model.78663_t
Valid prediction for GlimmerHMM_glimmerT_45035-T1
Valid prediction for snap_scaffold_19-snap.990-T1
Valid prediction for snap_scaffold_19-snap.993-T1
Valid prediction for GeneMark_model.78668_t
Valid prediction for snap_scaffold_19-snap.997-T1
Valid prediction for GeneMark_model.78677_t
Valid prediction for GeneMark_model.78670_t
Valid prediction for GlimmerHMM_glimmerT_45046-T1
Valid prediction for GlimmerHMM_glimmerT_45027-T1
Valid prediction for GeneMark_model.78682_t
Valid prediction for GlimmerHMM_glimmerT_45028-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14297, rend_intergenic: 13244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112152, rend_intergenic: 102846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 173147
-exon list size: 368


building trellis

0.3    
0.5    
0.8    
1.1    
1.4    
1.6    
1.9    
2.2    
2.4    
2.7    
3.0    
3.2    
3.5    
3.8    
4.1    
4.3    
4.6    
4.9    
5.1    
5.4    
5.7    
5.9    
6.2    
6.5    
6.8    
7.0    
7.3    
7.6    
7.8    
8.1    
8.4    
8.6    
8.9    
9.2    
9.5    
9.7    
10.0    
10.3    
10.5    
10.8    
11.1    
11.4    
11.6    
11.9    
12.2    
12.4    
12.7    
13.0    
13.2    
13.5    
13.8    
14.1    
14.3    
14.6    
14.9    
15.1    
15.4    
15.7    
15.9    
16.2    
16.5    
16.8    
17.0    
17.3    
17.6    
17.8    
18.1    
18.4    
18.6    
18.9    
19.2    
19.5    
19.7    
20.0    
20.3    
20.5    
20.8    
21.1    
21.4    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.2    
23.5    
23.8    
24.1    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
25.9    
26.2    
26.5    
26.8    
27.0    
27.3    
27.6    
27.8    
28.1    
28.4    
28.6    
28.9    
29.2    
29.5    
29.7    
30.0    
30.3    
30.5    
30.8    
31.1    
31.4    
31.6    
31.9    
32.2    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.3    
34.6    
34.9    
35.1    
35.4    
35.7    
35.9    
36.2    
36.5    
36.8    
37.0    
37.3    
37.6    
37.8    
38.1    
38.4    
38.6    
38.9    
39.2    
39.5    
39.7    
40.0    
40.3    
40.5    
40.8    
41.1    
41.4    
41.6    
41.9    
42.2    
42.4    
42.7    
43.0    
43.2    
43.5    
43.8    
44.1    
44.3    
44.6    
44.9    
45.1    
45.4    
45.7    
45.9    
46.2    
46.5    
46.8    
47.0    
47.3    
47.6    
47.8    
48.1    
48.4    
48.6    
48.9    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.1    
51.4    
51.6    
51.9    
52.2    
52.4    
52.7    
53.0    
53.2    
53.5    
53.8    
54.1    
54.3    
54.6    
54.9    
55.1    
55.4    
55.7    
55.9    
56.2    
56.5    
56.8    
57.0    
57.3    
57.6    
57.8    
58.1    
58.4    
58.6    
58.9    
59.2    
59.5    
59.7    
60.0    
60.3    
60.5    
60.8    
61.1    
61.4    
61.6    
61.9    
62.2    
62.4    
62.7    
63.0    
63.2    
63.5    
63.8    
64.1    
64.3    
64.6    
64.9    
65.1    
65.4    
65.7    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.8    
68.1    
68.4    
68.6    
68.9    
69.2    
69.5    
69.7    
70.0    
70.3    
70.5    
70.8    
71.1    
71.4    
71.6    
71.9    
72.2    
72.4    
72.7    
73.0    
73.2    
73.5    
73.8    
74.1    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
75.9    
76.2    
76.5    
76.8    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.6    
78.9    
79.2    
79.5    
79.7    
80.0    
80.3    
80.5    
80.8    
81.1    
81.4    
81.6    
81.9    
82.2    
82.4    
82.7    
83.0    
83.2    
83.5    
83.8    
84.1    
84.3    
84.6    
84.9    
85.1    
85.4    
85.7    
85.9    
86.2    
86.5    
86.8    
87.0    
87.3    
87.6    
87.8    
88.1    
88.4    
88.6    
88.9    
89.2    
89.5    
89.7    
90.0    
90.3    
90.5    
90.8    
91.1    
91.4    
91.6    
91.9    
92.2    
92.4    
92.7    
93.0    
93.2    
93.5    
93.8    
94.1    
94.3    
94.6    
94.9    
95.1    
95.4    
95.7    
95.9    
96.2    
96.5    
96.8    
97.0    
97.3    
97.6    
97.8    
98.1    
98.4    
98.6    
98.9    
99.2    
99.5    
99.7    
-found 20 predictions from path traversal
Error with prediction: snap lend_intergenic: 14297, rend_intergenic: 13244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112152, rend_intergenic: 102846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 160085 - 173147
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 161134 - 173147
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 161184 - 173147
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support