-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_444625-682766 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.77523_t Valid prediction for GlimmerHMM_glimmerT_44527-T1 Valid prediction for Augustus_model.g29731.t1 Valid prediction for CodingQuarry_transcript_25518-T1 Couldn't classify 142167, 142274 Couldn't classify 146393, 146472 Sorry, prediction pasa_asmbl_21989.p1 fails validation. (CGT) AA 142167-142274 GT AGG (GTG) AG 142691-142879 GT ATG (AGG) AG 145851-145913 GT AGG (CAT) AG 146187-146217 GC AGG (CTG) AG 146393-146472 GT ATG -recovered pasa_asmbl_21989.p1, internal, 142691, 142879 -recovered pasa_asmbl_21989.p1, internal, 145851, 145913 -recovered pasa_asmbl_21989.p1, internal, 146187, 146217 -recovered pasa_asmbl_21989.p1, internal, 146393, 146472 Valid prediction for HiQ_model.g29742.t1 Valid prediction for snap_scaffold_19-snap.139-T1 Valid prediction for GeneMark_model.77491_t Valid prediction for GeneMark_model.77453_t Valid prediction for GeneMark_model.77471_t Valid prediction for GeneMark_model.77527_t Valid prediction for Augustus_model.g29737.t1 Valid prediction for GeneMark_model.77518_t Valid prediction for GeneMark_model.77493_t Valid prediction for GlimmerHMM_glimmerT_44532-T1 Valid prediction for GlimmerHMM_glimmerT_44528-T1 Valid prediction for GeneMark_model.77512_t Valid prediction for Augustus_model.g29730.t1 Valid prediction for GlimmerHMM_glimmerT_44513-T1 Valid prediction for GeneMark_model.77514_t Valid prediction for GeneMark_model.77456_t Valid prediction for GlimmerHMM_glimmerT_44504-T1 Valid prediction for snap_scaffold_19-snap.129-T1 Valid prediction for GeneMark_model.77473_t Couldn't classify 186998, 187367 Couldn't classify 187990, 188396 Sorry, prediction pasa_asmbl_21995.p1 fails validation. (GGT) CA 186998-187367 GT AGG (TGA) AG 187990-188396 GG CTG Valid prediction for snap_scaffold_19-snap.102-T1 Valid prediction for GeneMark_model.77504_t Valid prediction for GlimmerHMM_glimmerT_44534-T1 Valid prediction for GeneMark_model.77510_t Valid prediction for GeneMark_model.77464_t Couldn't classify 150231, 150313 Sorry, prediction pasa_asmbl_21990.p1 fails validation. (CAC) GA 150231-150313 GT AGG (CTC) AG 150468-150543 GT ACG (TAC) AG 151031-151190 GT GGG (GAA) AG 151765-151873 GT CGG (AGA) AG 153611-153780 GT AGG (CTG) AG 154329-154420 AG GAA -recovered pasa_asmbl_21990.p1, terminal, 154329, 154420 -recovered pasa_asmbl_21990.p1, internal, 150468, 150543 -recovered pasa_asmbl_21990.p1, internal, 151031, 151190 -recovered pasa_asmbl_21990.p1, internal, 151765, 151873 -recovered pasa_asmbl_21990.p1, internal, 153611, 153780 Valid prediction for GeneMark_model.77516_t Valid prediction for snap_scaffold_19-snap.122-T1 Valid prediction for GlimmerHMM_glimmerT_44522-T1 Valid prediction for GeneMark_model.77468_t Valid prediction for GeneMark_model.77487_t Valid prediction for GlimmerHMM_glimmerT_44524-T1 Valid prediction for GlimmerHMM_glimmerT_44530-T1 Valid prediction for Augustus_model.g29740.t1 Valid prediction for Augustus_model.g29732.t1 Valid prediction for snap_scaffold_19-snap.106-T1 Valid prediction for GeneMark_model.77463_t Valid prediction for snap_scaffold_19-snap.115-T1 Valid prediction for GeneMark_model.77525_t Valid prediction for GeneMark_model.77520_t Valid prediction for GeneMark_model.77508_t Valid prediction for GlimmerHMM_glimmerT_44523-T1 Couldn't classify 6500, 6541 Sorry, prediction GeneMark_model.77451_t fails validation. (AGG) AG 6500-6541 GT GGG (GGG) AG 7280-7429 GT CAG (AAA) AG 7455-7466 GC GGG (AAC) AG 7493-7555 GT GAG (CGG) AG 7576-7602 GT GGG (TGG) AG 7628-7639 GC GGG (GGA) AG 8110-8115 GT GGG (AGA) AG 8146-8385 GT GAG (AGG) AG 8411-8422 GT GAG (AAG) AG 8451-8519 GT AGG (AGA) AG 8566-8577 GT GGG (AGG) AG 8603-8740 GC GGG (GAG) AG 8769-8777 GT AGG (ATG) AG 9353-9409 GT GGG (GAG) AG 9433-9453 GT GGG (GAG) AG 9477-9500 GT GGG (GCG) AG 9542-9553 GT GGG (GAG) AG 9577-9630 GT GGG (AGA) AG 9653-9667 GT GGG (AGA) AG 9697-9735 GT GGG (GGA) AG 9758-9772 GT GGG (GTT) AG 9796-9807 GT GGG (GGT) AG 9832-9888 GT CTG (GAG) AG 9974-10200 GT TGG (GAG) AG 10228-10252 GT TTG (AAC) AG 10287-10374 CA AGC add_exon() Sorry, GeneMark_model.77451_t 9353-9409-initial-1 is invalid. -recovered GeneMark_model.77451_t, initial, 9353, 9409 -recovered GeneMark_model.77451_t, terminal, 10287, 10374 -recovered GeneMark_model.77451_t, internal, 6500, 6541 -recovered GeneMark_model.77451_t, internal, 7280, 7429 -recovered GeneMark_model.77451_t, internal, 7455, 7466 -recovered GeneMark_model.77451_t, internal, 7493, 7555 -recovered GeneMark_model.77451_t, internal, 7576, 7602 -recovered GeneMark_model.77451_t, internal, 7628, 7639 -recovered GeneMark_model.77451_t, internal, 8110, 8115 -recovered GeneMark_model.77451_t, internal, 8146, 8385 -recovered GeneMark_model.77451_t, internal, 8411, 8422 -recovered GeneMark_model.77451_t, internal, 8451, 8519 -recovered GeneMark_model.77451_t, internal, 8566, 8577 -recovered GeneMark_model.77451_t, internal, 8603, 8740 -recovered GeneMark_model.77451_t, internal, 8769, 8777 -recovered GeneMark_model.77451_t, internal, 9353, 9409 -recovered GeneMark_model.77451_t, internal, 9433, 9453 -recovered GeneMark_model.77451_t, internal, 9477, 9500 -recovered GeneMark_model.77451_t, internal, 9542, 9553 -recovered GeneMark_model.77451_t, internal, 9577, 9630 -recovered GeneMark_model.77451_t, internal, 9653, 9667 -recovered GeneMark_model.77451_t, internal, 9697, 9735 -recovered GeneMark_model.77451_t, internal, 9758, 9772 -recovered GeneMark_model.77451_t, internal, 9796, 9807 -recovered GeneMark_model.77451_t, internal, 9832, 9888 -recovered GeneMark_model.77451_t, internal, 9974, 10200 -recovered GeneMark_model.77451_t, internal, 10228, 10252 Valid prediction for snap_scaffold_19-snap.125-T1 Valid prediction for Augustus_model.g29733.t1 Couldn't classify 189684, 190043 Sorry, prediction pasa_asmbl_21996.p2 fails validation. (CTG) CG 189684-190043 GG GGG Valid prediction for GeneMark_model.77459_t Valid prediction for snap_scaffold_19-snap.130-T1 Valid prediction for Augustus_model.g29735.t1 Valid prediction for GeneMark_model.77496_t Valid prediction for GlimmerHMM_glimmerT_44520-T1 Valid prediction for snap_scaffold_19-snap.134-T1 Valid prediction for GeneMark_model.77489_t Valid prediction for snap_scaffold_19-snap.136-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GeneMark_model.77506_t Valid prediction for snap_scaffold_19-snap.97-T1 Couldn't classify 164850, 164851 Sorry, prediction pasa_asmbl_21993.p1 fails validation. (ATG) CT 164850-164851 GT ATG (GGC) AG 165020-165092 GT CTG (AGC) AG 165215-165277 GT AGG (ATT) AG 165788-165911 GT AGG (GAG) AG 166737-166952 GT AGG (AGT) AG 167169-167239 GT AGG (GAT) AG 168263-168332 GT AGG (AAT) AG 168556-168764 GT GGG (AAA) AG 169037-169248 GT TAG (TGA) AG 169929-170133 GG GAG -recovered pasa_asmbl_21993.p1, terminal, 169929, 170133 -recovered pasa_asmbl_21993.p1, internal, 165020, 165092 -recovered pasa_asmbl_21993.p1, internal, 165215, 165277 -recovered pasa_asmbl_21993.p1, internal, 165788, 165911 -recovered pasa_asmbl_21993.p1, internal, 166737, 166952 -recovered pasa_asmbl_21993.p1, internal, 167169, 167239 -recovered pasa_asmbl_21993.p1, internal, 168263, 168332 -recovered pasa_asmbl_21993.p1, internal, 168556, 168764 -recovered pasa_asmbl_21993.p1, internal, 169037, 169248 Valid prediction for GlimmerHMM_glimmerT_44519-T1 Valid prediction for Augustus_model.g29738.t1 Valid prediction for GlimmerHMM_glimmerT_44516-T1 Valid prediction for GlimmerHMM_glimmerT_44511-T1 Valid prediction for snap_scaffold_19-snap.98-T1 Valid prediction for GeneMark_model.77485_t Valid prediction for snap_scaffold_19-snap.119-T1 Valid prediction for HiQ_model.g29739.t1 Valid prediction for GeneMark_model.77476_t Valid prediction for GeneMark_model.77478_t Valid prediction for snap_scaffold_19-snap.104-T1 Valid prediction for GeneMark_model.77498_t Valid prediction for GeneMark_model.77480_t Valid prediction for snap_scaffold_19-snap.128-T1 Valid prediction for GlimmerHMM_glimmerT_44512-T1 Valid prediction for snap_scaffold_19-snap.101-T1 Valid prediction for GeneMark_model.77483_t Valid prediction for GeneMark_model.77524_t Valid prediction for pasa_asmbl_22000.p1 Valid prediction for GeneMark_model.77494_t Valid prediction for GlimmerHMM_glimmerT_44525-T1 Valid prediction for Augustus_model.g29727.t1 Valid prediction for snap_scaffold_19-snap.116-T1 Valid prediction for GlimmerHMM_glimmerT_44507-T1 Couldn't classify 164850, 164851 Couldn't classify 169933, 169933 Sorry, prediction CodingQuarry_transcript_25516-T1 fails validation. (ATG) CT 164850-164851 GT ATG (GGC) AG 165020-165092 GT CTG (AGC) AG 165215-165277 GT AGG (ATT) AG 165788-165911 GT AGG (GAG) AG 166737-166952 GT AGG (AGT) AG 167169-167239 GT AGG (GAT) AG 168263-168332 GT AGG (AAT) AG 168556-168764 GT GGG (AAA) AG 169037-169248 GT TAG (AAG) AG 169933-169933 AG GAA -recovered CodingQuarry_transcript_25516-T1, internal, 165020, 165092 -recovered CodingQuarry_transcript_25516-T1, internal, 165215, 165277 -recovered CodingQuarry_transcript_25516-T1, internal, 165788, 165911 -recovered CodingQuarry_transcript_25516-T1, internal, 166737, 166952 -recovered CodingQuarry_transcript_25516-T1, internal, 167169, 167239 -recovered CodingQuarry_transcript_25516-T1, internal, 168263, 168332 -recovered CodingQuarry_transcript_25516-T1, internal, 168556, 168764 -recovered CodingQuarry_transcript_25516-T1, internal, 169037, 169248 Valid prediction for GeneMark_model.77458_t Valid prediction for GlimmerHMM_glimmerT_44506-T1 Valid prediction for snap_scaffold_19-snap.112-T1 Valid prediction for GlimmerHMM_glimmerT_44517-T1 Couldn't classify 164850, 164851 Sorry, prediction CodingQuarry_transcript_25515-T1 fails validation. (ATG) CT 164850-164851 GT ATG (GGC) AG 165020-165092 GT CTG (AGC) AG 165215-165277 GT AGG (ATT) AG 165788-165911 GT AGG (GAG) AG 166737-166952 GT AGG (AGT) AG 167169-167239 GT AGG (GAT) AG 168263-168332 GT AGG (AAT) AG 168556-168764 GT GGG (AAA) AG 169037-169248 GT TAG (TGA) AG 169929-170133 GG GAG -recovered CodingQuarry_transcript_25515-T1, terminal, 169929, 170133 -recovered CodingQuarry_transcript_25515-T1, internal, 165020, 165092 -recovered CodingQuarry_transcript_25515-T1, internal, 165215, 165277 -recovered CodingQuarry_transcript_25515-T1, internal, 165788, 165911 -recovered CodingQuarry_transcript_25515-T1, internal, 166737, 166952 -recovered CodingQuarry_transcript_25515-T1, internal, 167169, 167239 -recovered CodingQuarry_transcript_25515-T1, internal, 168263, 168332 -recovered CodingQuarry_transcript_25515-T1, internal, 168556, 168764 -recovered CodingQuarry_transcript_25515-T1, internal, 169037, 169248 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.77484_t Valid prediction for GeneMark_model.77492_t Valid prediction for GlimmerHMM_glimmerT_44510-T1 Valid prediction for GlimmerHMM_glimmerT_44505-T1 Valid prediction for snap_scaffold_19-snap.123-T1 Valid prediction for GeneMark_model.77503_t Valid prediction for GeneMark_model.77511_t Valid prediction for GeneMark_model.77465_t Valid prediction for GeneMark_model.77486_t Valid prediction for snap_scaffold_19-snap.107-T1 Valid prediction for GeneMark_model.77470_t Couldn't classify 63657, 63707 Sorry, prediction pasa_asmbl_21191.p1 fails validation. (CGC) AG 63657-63707 GT AGG (CTG) AG 64190-64307 GT AGG (GGG) AG 64791-64927 GT AGG (GTG) AG 66252-66350 GT AGG (GAG) AG 66699-66836 GC AGG -recovered pasa_asmbl_21191.p1, terminal, 66699, 66836 -recovered pasa_asmbl_21191.p1, internal, 63657, 63707 -recovered pasa_asmbl_21191.p1, internal, 64190, 64307 -recovered pasa_asmbl_21191.p1, internal, 64791, 64927 -recovered pasa_asmbl_21191.p1, internal, 66252, 66350 -recovered pasa_asmbl_21191.p1, internal, 66699, 66836 Valid prediction for snap_scaffold_19-snap.138-T1 Valid prediction for snap_scaffold_19-snap.127-T1 Valid prediction for snap_scaffold_19-snap.100-T1 Valid prediction for GeneMark_model.77472_t Valid prediction for snap_scaffold_19-snap.108-T1 Valid prediction for GlimmerHMM_glimmerT_44509-T1 Valid prediction for GlimmerHMM_glimmerT_44533-T1 Valid prediction for GeneMark_model.77454_t Valid prediction for GeneMark_model.77474_t Valid prediction for GlimmerHMM_glimmerT_44531-T1 Valid prediction for GeneMark_model.77513_t Valid prediction for snap_scaffold_19-snap.105-T1 Valid prediction for snap_scaffold_19-snap.126-T1 Valid prediction for GlimmerHMM_glimmerT_44503-T1 Valid prediction for GeneMark_model.77488_t Valid prediction for GlimmerHMM_glimmerT_44521-T1 Valid prediction for snap_scaffold_19-snap.114-T1 Valid prediction for GeneMark_model.77521_t Valid prediction for snap_scaffold_19-snap.121-T1 Valid prediction for GeneMark_model.77507_t Valid prediction for snap_scaffold_19-snap.133-T1 Valid prediction for GeneMark_model.77462_t Valid prediction for GeneMark_model.77522_t Valid prediction for GlimmerHMM_glimmerT_44508-T1 Valid prediction for Augustus_model.g29734.t1 Valid prediction for GeneMark_model.77479_t Valid prediction for GeneMark_model.77526_t Valid prediction for GeneMark_model.77455_t Valid prediction for snap_scaffold_19-snap.103-T1 Valid prediction for GeneMark_model.77461_t Valid prediction for GeneMark_model.77457_t Valid prediction for Augustus_model.g29728.t1 Valid prediction for Augustus_model.g29729.t1 Valid prediction for snap_scaffold_19-snap.118-T1 Valid prediction for snap_scaffold_19-snap.113-T1 Valid prediction for snap_scaffold_19-snap.137-T1 Valid prediction for Augustus_model.g29741.t1 Valid prediction for GeneMark_model.77499_t Valid prediction for GeneMark_model.77517_t Valid prediction for snap_scaffold_19-snap.124-T1 Valid prediction for snap_scaffold_19-snap.135-T1 Valid prediction for HiQ_model.g29736.t1 Valid prediction for GeneMark_model.77481_t Valid prediction for snap_scaffold_19-snap.110-T1 Valid prediction for GeneMark_model.77515_t Valid prediction for GeneMark_model.77460_t Valid prediction for snap_scaffold_19-snap.132-T1 Valid prediction for GlimmerHMM_glimmerT_44518-T1 Valid prediction for GeneMark_model.77477_t Valid prediction for GeneMark_model.77452_t Valid prediction for GlimmerHMM_glimmerT_44515-T1 Valid prediction for GeneMark_model.77502_t Valid prediction for GeneMark_model.77497_t Valid prediction for GeneMark_model.77505_t Valid prediction for snap_scaffold_19-snap.120-T1 Valid prediction for snap_scaffold_19-snap.131-T1 Valid prediction for snap_scaffold_19-snap.111-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for snap_scaffold_19-snap.99-T1 Valid prediction for GeneMark_model.77501_t Valid prediction for GeneMark_model.77482_t Valid prediction for GeneMark_model.77509_t Valid prediction for GlimmerHMM_glimmerT_44514-T1 Valid prediction for snap_scaffold_19-snap.109-T1 Sorry, intron length (6) is less than minimum required (10) Valid prediction for GeneMark_model.77467_t Valid prediction for GeneMark_model.77475_t Valid prediction for GeneMark_model.77519_t Valid prediction for GeneMark_model.77469_t Valid prediction for GeneMark_model.77495_t Valid prediction for GlimmerHMM_glimmerT_44529-T1 Valid prediction for GlimmerHMM_glimmerT_44526-T1 Valid prediction for snap_scaffold_19-snap.117-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17375, rend_intergenic: 13885 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32313, rend_intergenic: 18079 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 34215, rend_intergenic: 32911 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39824, rend_intergenic: 34937 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50660, rend_intergenic: 41835 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86159, rend_intergenic: 53747 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 89499, rend_intergenic: 88740 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 106280, rend_intergenic: 89569 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135097, rend_intergenic: 134293 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154420, rend_intergenic: 143158 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 163509, rend_intergenic: 155690 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170133, rend_intergenic: 165473 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175701, rend_intergenic: 171823 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214942, rend_intergenic: 185216 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 231351, rend_intergenic: 225555 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 238142 -exon list size: 992 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 44 predictions from path traversal Error with prediction: snap lend_intergenic: 17375, rend_intergenic: 13885 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32313, rend_intergenic: 18079 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 34215, rend_intergenic: 32911 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39824, rend_intergenic: 34937 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50660, rend_intergenic: 41835 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86159, rend_intergenic: 53747 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 89499, rend_intergenic: 88740 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 106280, rend_intergenic: 89569 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135097, rend_intergenic: 134293 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154420, rend_intergenic: 143158 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 163509, rend_intergenic: 155690 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170133, rend_intergenic: 165473 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175701, rend_intergenic: 171823 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214942, rend_intergenic: 185216 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 231351, rend_intergenic: 225555 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 18 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 12049 -exon list size: 80 building trellis 1.2 2.4 3.7 4.9 6.1 7.3 8.5 9.8 11.0 12.2 13.4 14.6 15.9 17.1 18.3 19.5 20.7 22.0 23.2 24.4 25.6 26.8 28.0 29.3 30.5 31.7 32.9 34.1 35.4 36.6 37.8 39.0 40.2 41.5 42.7 43.9 45.1 46.3 47.6 48.8 50.0 51.2 52.4 53.7 54.9 56.1 57.3 58.5 59.8 61.0 62.2 63.4 64.6 65.9 67.1 68.3 69.5 70.7 72.0 73.2 74.4 75.6 76.8 78.0 79.3 80.5 81.7 82.9 84.1 85.4 86.6 87.8 89.0 90.2 91.5 92.7 93.9 95.1 96.3 97.6 98.8 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 12009 -exon list size: 79 building trellis 1.2 2.5 3.7 4.9 6.2 7.4 8.6 9.9 11.1 12.3 13.6 14.8 16.0 17.3 18.5 19.8 21.0 22.2 23.5 24.7 25.9 27.2 28.4 29.6 30.9 32.1 33.3 34.6 35.8 37.0 38.3 39.5 40.7 42.0 43.2 44.4 45.7 46.9 48.1 49.4 50.6 51.9 53.1 54.3 55.6 56.8 58.0 59.3 60.5 61.7 63.0 64.2 65.4 66.7 67.9 69.1 70.4 71.6 72.8 74.1 75.3 76.5 77.8 79.0 80.2 81.5 82.7 84.0 85.2 86.4 87.7 88.9 90.1 91.4 92.6 93.8 95.1 96.3 97.5 98.8 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11969 -exon list size: 78 building trellis 1.2 2.5 3.8 5.0 6.2 7.5 8.8 10.0 11.2 12.5 13.8 15.0 16.2 17.5 18.8 20.0 21.2 22.5 23.8 25.0 26.2 27.5 28.7 30.0 31.2 32.5 33.8 35.0 36.2 37.5 38.8 40.0 41.2 42.5 43.8 45.0 46.2 47.5 48.8 50.0 51.2 52.5 53.8 55.0 56.2 57.5 58.8 60.0 61.3 62.5 63.7 65.0 66.2 67.5 68.8 70.0 71.2 72.5 73.8 75.0 76.2 77.5 78.8 80.0 81.2 82.5 83.8 85.0 86.2 87.5 88.8 90.0 91.2 92.5 93.8 95.0 96.2 97.5 98.8 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11919 -exon list size: 77 building trellis 1.3 2.5 3.8 5.1 6.3 7.6 8.9 10.1 11.4 12.7 13.9 15.2 16.5 17.7 19.0 20.3 21.5 22.8 24.1 25.3 26.6 27.8 29.1 30.4 31.6 32.9 34.2 35.4 36.7 38.0 39.2 40.5 41.8 43.0 44.3 45.6 46.8 48.1 49.4 50.6 51.9 53.2 54.4 55.7 57.0 58.2 59.5 60.8 62.0 63.3 64.6 65.8 67.1 68.4 69.6 70.9 72.2 73.4 74.7 75.9 77.2 78.5 79.7 81.0 82.3 83.5 84.8 86.1 87.3 88.6 89.9 91.1 92.4 93.7 94.9 96.2 97.5 98.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11749 -exon list size: 72 building trellis 1.4 2.7 4.1 5.4 6.8 8.1 9.5 10.8 12.2 13.5 14.9 16.2 17.6 18.9 20.3 21.6 23.0 24.3 25.7 27.0 28.4 29.7 31.1 32.4 33.8 35.1 36.5 37.8 39.2 40.5 41.9 43.2 44.6 45.9 47.3 48.6 50.0 51.4 52.7 54.1 55.4 56.8 58.1 59.5 60.8 62.2 63.5 64.9 66.2 67.6 68.9 70.3 71.6 73.0 74.3 75.7 77.0 78.4 79.7 81.1 82.4 83.8 85.1 86.5 87.8 89.2 90.5 91.9 93.2 94.6 95.9 97.3 98.6 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11709 -exon list size: 71 building trellis 1.4 2.7 4.1 5.5 6.8 8.2 9.6 11.0 12.3 13.7 15.1 16.4 17.8 19.2 20.5 21.9 23.3 24.7 26.0 27.4 28.8 30.1 31.5 32.9 34.2 35.6 37.0 38.4 39.7 41.1 42.5 43.8 45.2 46.6 47.9 49.3 50.7 52.1 53.4 54.8 56.2 57.5 58.9 60.3 61.6 63.0 64.4 65.8 67.1 68.5 69.9 71.2 72.6 74.0 75.3 76.7 78.1 79.5 80.8 82.2 83.6 84.9 86.3 87.7 89.0 90.4 91.8 93.2 94.5 95.9 97.3 98.6 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11679 -exon list size: 70 building trellis 1.4 2.8 4.2 5.6 6.9 8.3 9.7 11.1 12.5 13.9 15.3 16.7 18.1 19.4 20.8 22.2 23.6 25.0 26.4 27.8 29.2 30.6 31.9 33.3 34.7 36.1 37.5 38.9 40.3 41.7 43.1 44.4 45.8 47.2 48.6 50.0 51.4 52.8 54.2 55.6 56.9 58.3 59.7 61.1 62.5 63.9 65.3 66.7 68.1 69.4 70.8 72.2 73.6 75.0 76.4 77.8 79.2 80.6 81.9 83.3 84.7 86.1 87.5 88.9 90.3 91.7 93.1 94.4 95.8 97.2 98.6 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11629 -exon list size: 69 building trellis 1.4 2.8 4.2 5.6 7.0 8.5 9.9 11.3 12.7 14.1 15.5 16.9 18.3 19.7 21.1 22.5 23.9 25.4 26.8 28.2 29.6 31.0 32.4 33.8 35.2 36.6 38.0 39.4 40.8 42.3 43.7 45.1 46.5 47.9 49.3 50.7 52.1 53.5 54.9 56.3 57.7 59.2 60.6 62.0 63.4 64.8 66.2 67.6 69.0 70.4 71.8 73.2 74.6 76.1 77.5 78.9 80.3 81.7 83.1 84.5 85.9 87.3 88.7 90.1 91.5 93.0 94.4 95.8 97.2 98.6 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 10291 -exon list size: 60 building trellis 1.6 3.2 4.8 6.5 8.1 9.7 11.3 12.9 14.5 16.1 17.7 19.4 21.0 22.6 24.2 25.8 27.4 29.0 30.6 32.3 33.9 35.5 37.1 38.7 40.3 41.9 43.5 45.2 46.8 48.4 50.0 51.6 53.2 54.8 56.5 58.1 59.7 61.3 62.9 64.5 66.1 67.7 69.4 71.0 72.6 74.2 75.8 77.4 79.0 80.6 82.3 83.9 85.5 87.1 88.7 90.3 91.9 93.5 95.2 96.8 98.4 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support