-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_4383674-4537095

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_45012-T1
Valid prediction for GeneMark_model.78625_t
Valid prediction for snap_scaffold_19-snap.973-T1
Valid prediction for GeneMark_model.78639_t
Valid prediction for GeneMark_model.78638_t
Valid prediction for snap_scaffold_19-snap.969-T1
Valid prediction for GeneMark_model.78643_t
Valid prediction for GeneMark_model.78626_t
Valid prediction for snap_scaffold_19-snap.958-T1
Valid prediction for GeneMark_model.78632_t
Valid prediction for GlimmerHMM_glimmerT_45023-T1
Valid prediction for GlimmerHMM_glimmerT_45024-T1
Valid prediction for GeneMark_model.78652_t
Valid prediction for snap_scaffold_19-snap.977-T1
Valid prediction for GlimmerHMM_glimmerT_45017-T1
Valid prediction for GeneMark_model.78637_t
Valid prediction for snap_scaffold_19-snap.963-T1
Valid prediction for GeneMark_model.78646_t
Valid prediction for snap_scaffold_19-snap.979-T1
Valid prediction for GeneMark_model.78657_t
Valid prediction for GeneMark_model.78644_t
Valid prediction for GlimmerHMM_glimmerT_45011-T1
Valid prediction for GeneMark_model.78645_t
Valid prediction for GeneMark_model.78628_t
Valid prediction for GeneMark_model.78622_t
Valid prediction for GeneMark_model.78636_t
Valid prediction for GlimmerHMM_glimmerT_45009-T1
Valid prediction for GeneMark_model.78624_t
Valid prediction for Augustus_model.g30010.t1
Valid prediction for Augustus_model.g30013.t1
Valid prediction for snap_scaffold_19-snap.949-T1
Valid prediction for GeneMark_model.78656_t
Valid prediction for snap_scaffold_19-snap.954-T1
Valid prediction for GeneMark_model.78641_t
Valid prediction for GeneMark_model.78647_t
Valid prediction for GeneMark_model.78650_t
Valid prediction for GeneMark_model.78659_t
Valid prediction for Augustus_model.g30011.t1
Valid prediction for snap_scaffold_19-snap.960-T1
Valid prediction for snap_scaffold_19-snap.950-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.967-T1
Valid prediction for snap_scaffold_19-snap.952-T1
Valid prediction for GlimmerHMM_glimmerT_45022-T1
Valid prediction for GlimmerHMM_glimmerT_45019-T1
Valid prediction for GeneMark_model.78660_t
Valid prediction for GeneMark_model.78630_t
Valid prediction for snap_scaffold_19-snap.953-T1
Valid prediction for GlimmerHMM_glimmerT_45013-T1
Valid prediction for GeneMark_model.78658_t
Valid prediction for snap_scaffold_19-snap.964-T1
Valid prediction for GeneMark_model.78623_t
Valid prediction for GlimmerHMM_glimmerT_45007-T1
Valid prediction for GeneMark_model.78654_t
Valid prediction for snap_scaffold_19-snap.951-T1
Valid prediction for GeneMark_model.78627_t
Valid prediction for snap_scaffold_19-snap.974-T1
Valid prediction for snap_scaffold_19-snap.971-T1
Valid prediction for GeneMark_model.78633_t
Valid prediction for snap_scaffold_19-snap.970-T1
Valid prediction for GeneMark_model.78640_t
Valid prediction for snap_scaffold_19-snap.966-T1
Valid prediction for GeneMark_model.78648_t
Valid prediction for GeneMark_model.78651_t
Valid prediction for snap_scaffold_19-snap.975-T1
Valid prediction for GeneMark_model.78634_t
Valid prediction for GeneMark_model.78635_t
Valid prediction for GeneMark_model.78642_t
Valid prediction for Augustus_model.g30012.t1
Valid prediction for GlimmerHMM_glimmerT_45018-T1
Valid prediction for snap_scaffold_19-snap.965-T1
Valid prediction for GeneMark_model.78631_t
Valid prediction for GeneMark_model.78649_t
Valid prediction for snap_scaffold_19-snap.968-T1
Valid prediction for GlimmerHMM_glimmerT_45021-T1
Valid prediction for GeneMark_model.78653_t
Valid prediction for GlimmerHMM_glimmerT_45010-T1
Valid prediction for snap_scaffold_19-snap.956-T1
Valid prediction for snap_scaffold_19-snap.978-T1
Valid prediction for snap_scaffold_19-snap.972-T1
Valid prediction for GeneMark_model.78655_t
Valid prediction for GeneMark_model.78629_t
Valid prediction for Augustus_model.g30014.t1
Valid prediction for GlimmerHMM_glimmerT_45014-T1
Valid prediction for snap_scaffold_19-snap.955-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_19-snap.957-T1
Valid prediction for snap_scaffold_19-snap.976-T1
Valid prediction for snap_scaffold_19-snap.959-T1
Valid prediction for GlimmerHMM_glimmerT_45016-T1
Valid prediction for GlimmerHMM_glimmerT_45008-T1
Valid prediction for snap_scaffold_19-snap.961-T1
Valid prediction for GlimmerHMM_glimmerT_45020-T1
Valid prediction for snap_scaffold_19-snap.962-T1
Valid prediction for GlimmerHMM_glimmerT_45015-T1
Valid prediction for snap_scaffold_19-snap.980-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11938, rend_intergenic: 3159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44032, rend_intergenic: 43480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46206, rend_intergenic: 44080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85049, rend_intergenic: 78424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99072, rend_intergenic: 96531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126381, rend_intergenic: 121447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 153422
-exon list size: 395


building trellis

0.3    
0.5    
0.8    
1.0    
1.3    
1.5    
1.8    
2.0    
2.3    
2.5    
2.8    
3.0    
3.3    
3.5    
3.8    
4.0    
4.3    
4.5    
4.8    
5.0    
5.3    
5.5    
5.8    
6.0    
6.3    
6.5    
6.8    
7.1    
7.3    
7.6    
7.8    
8.1    
8.3    
8.6    
8.8    
9.1    
9.3    
9.6    
9.8    
10.1    
10.3    
10.6    
10.8    
11.1    
11.3    
11.6    
11.8    
12.1    
12.3    
12.6    
12.8    
13.1    
13.4    
13.6    
13.9    
14.1    
14.4    
14.6    
14.9    
15.1    
15.4    
15.6    
15.9    
16.1    
16.4    
16.6    
16.9    
17.1    
17.4    
17.6    
17.9    
18.1    
18.4    
18.6    
18.9    
19.1    
19.4    
19.6    
19.9    
20.2    
20.4    
20.7    
20.9    
21.2    
21.4    
21.7    
21.9    
22.2    
22.4    
22.7    
22.9    
23.2    
23.4    
23.7    
23.9    
24.2    
24.4    
24.7    
24.9    
25.2    
25.4    
25.7    
25.9    
26.2    
26.4    
26.7    
27.0    
27.2    
27.5    
27.7    
28.0    
28.2    
28.5    
28.7    
29.0    
29.2    
29.5    
29.7    
30.0    
30.2    
30.5    
30.7    
31.0    
31.2    
31.5    
31.7    
32.0    
32.2    
32.5    
32.7    
33.0    
33.2    
33.5    
33.8    
34.0    
34.3    
34.5    
34.8    
35.0    
35.3    
35.5    
35.8    
36.0    
36.3    
36.5    
36.8    
37.0    
37.3    
37.5    
37.8    
38.0    
38.3    
38.5    
38.8    
39.0    
39.3    
39.5    
39.8    
40.1    
40.3    
40.6    
40.8    
41.1    
41.3    
41.6    
41.8    
42.1    
42.3    
42.6    
42.8    
43.1    
43.3    
43.6    
43.8    
44.1    
44.3    
44.6    
44.8    
45.1    
45.3    
45.6    
45.8    
46.1    
46.3    
46.6    
46.9    
47.1    
47.4    
47.6    
47.9    
48.1    
48.4    
48.6    
48.9    
49.1    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.9    
51.1    
51.4    
51.6    
51.9    
52.1    
52.4    
52.6    
52.9    
53.1    
53.4    
53.7    
53.9    
54.2    
54.4    
54.7    
54.9    
55.2    
55.4    
55.7    
55.9    
56.2    
56.4    
56.7    
56.9    
57.2    
57.4    
57.7    
57.9    
58.2    
58.4    
58.7    
58.9    
59.2    
59.4    
59.7    
59.9    
60.2    
60.5    
60.7    
61.0    
61.2    
61.5    
61.7    
62.0    
62.2    
62.5    
62.7    
63.0    
63.2    
63.5    
63.7    
64.0    
64.2    
64.5    
64.7    
65.0    
65.2    
65.5    
65.7    
66.0    
66.2    
66.5    
66.8    
67.0    
67.3    
67.5    
67.8    
68.0    
68.3    
68.5    
68.8    
69.0    
69.3    
69.5    
69.8    
70.0    
70.3    
70.5    
70.8    
71.0    
71.3    
71.5    
71.8    
72.0    
72.3    
72.5    
72.8    
73.0    
73.3    
73.6    
73.8    
74.1    
74.3    
74.6    
74.8    
75.1    
75.3    
75.6    
75.8    
76.1    
76.3    
76.6    
76.8    
77.1    
77.3    
77.6    
77.8    
78.1    
78.3    
78.6    
78.8    
79.1    
79.3    
79.6    
79.8    
80.1    
80.4    
80.6    
80.9    
81.1    
81.4    
81.6    
81.9    
82.1    
82.4    
82.6    
82.9    
83.1    
83.4    
83.6    
83.9    
84.1    
84.4    
84.6    
84.9    
85.1    
85.4    
85.6    
85.9    
86.1    
86.4    
86.6    
86.9    
87.2    
87.4    
87.7    
87.9    
88.2    
88.4    
88.7    
88.9    
89.2    
89.4    
89.7    
89.9    
90.2    
90.4    
90.7    
90.9    
91.2    
91.4    
91.7    
91.9    
92.2    
92.4    
92.7    
92.9    
93.2    
93.5    
93.7    
94.0    
94.2    
94.5    
94.7    
95.0    
95.2    
95.5    
95.7    
96.0    
96.2    
96.5    
96.7    
97.0    
97.2    
97.5    
97.7    
98.0    
98.2    
98.5    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 18 predictions from path traversal
Error with prediction: snap lend_intergenic: 11938, rend_intergenic: 3159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44032, rend_intergenic: 43480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46206, rend_intergenic: 44080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85049, rend_intergenic: 78424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99072, rend_intergenic: 96531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126381, rend_intergenic: 121447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 23425
-exon list size: 74


building trellis

1.3    
2.6    
3.9    
5.3    
6.6    
7.9    
9.2    
10.5    
11.8    
13.2    
14.5    
15.8    
17.1    
18.4    
19.7    
21.1    
22.4    
23.7    
25.0    
26.3    
27.6    
28.9    
30.3    
31.6    
32.9    
34.2    
35.5    
36.8    
38.2    
39.5    
40.8    
42.1    
43.4    
44.7    
46.1    
47.4    
48.7    
50.0    
51.3    
52.6    
53.9    
55.3    
56.6    
57.9    
59.2    
60.5    
61.8    
63.2    
64.5    
65.8    
67.1    
68.4    
69.7    
71.1    
72.4    
73.7    
75.0    
76.3    
77.6    
78.9    
80.3    
81.6    
82.9    
84.2    
85.5    
86.8    
88.2    
89.5    
90.8    
92.1    
93.4    
94.7    
96.1    
97.4    
98.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 22866
-exon list size: 67


building trellis

1.4    
2.9    
4.3    
5.8    
7.2    
8.7    
10.1    
11.6    
13.0    
14.5    
15.9    
17.4    
18.8    
20.3    
21.7    
23.2    
24.6    
26.1    
27.5    
29.0    
30.4    
31.9    
33.3    
34.8    
36.2    
37.7    
39.1    
40.6    
42.0    
43.5    
44.9    
46.4    
47.8    
49.3    
50.7    
52.2    
53.6    
55.1    
56.5    
58.0    
59.4    
60.9    
62.3    
63.8    
65.2    
66.7    
68.1    
69.6    
71.0    
72.5    
73.9    
75.4    
76.8    
78.3    
79.7    
81.2    
82.6    
84.1    
85.5    
87.0    
88.4    
89.9    
91.3    
92.8    
94.2    
95.7    
97.1    
98.6    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 14022
-exon list size: 53


building trellis

1.8    
3.6    
5.5    
7.3    
9.1    
10.9    
12.7    
14.5    
16.4    
18.2    
20.0    
21.8    
23.6    
25.5    
27.3    
29.1    
30.9    
32.7    
34.5    
36.4    
38.2    
40.0    
41.8    
43.6    
45.5    
47.3    
49.1    
50.9    
52.7    
54.5    
56.4    
58.2    
60.0    
61.8    
63.6    
65.5    
67.3    
69.1    
70.9    
72.7    
74.5    
76.4    
78.2    
80.0    
81.8    
83.6    
85.5    
87.3    
89.1    
90.9    
92.7    
94.5    
96.4    
98.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11793
-exon list size: 45


building trellis

2.1    
4.3    
6.4    
8.5    
10.6    
12.8    
14.9    
17.0    
19.1    
21.3    
23.4    
25.5    
27.7    
29.8    
31.9    
34.0    
36.2    
38.3    
40.4    
42.6    
44.7    
46.8    
48.9    
51.1    
53.2    
55.3    
57.4    
59.6    
61.7    
63.8    
66.0    
68.1    
70.2    
72.3    
74.5    
76.6    
78.7    
80.9    
83.0    
85.1    
87.2    
89.4    
91.5    
93.6    
95.7    
97.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11597
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 134414 - 153422
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 134414 - 145280
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support