-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_3903895-4093286

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.78503_t
Valid prediction for snap_scaffold_19-snap.876-T1
Valid prediction for snap_scaffold_19-snap.858-T1
Valid prediction for GeneMark_model.78517_t
Valid prediction for Augustus_model.g29976.t1
Valid prediction for snap_scaffold_19-snap.855-T1
Valid prediction for GeneMark_model.78480_t
Valid prediction for GeneMark_model.78526_t
Valid prediction for GeneMark_model.78499_t
Valid prediction for snap_scaffold_19-snap.880-T1
Valid prediction for snap_scaffold_19-snap.881-T1
Valid prediction for Augustus_model.g29980.t1
Valid prediction for GeneMark_model.78473_t
Valid prediction for snap_scaffold_19-snap.848-T1
Valid prediction for GeneMark_model.78496_t
Valid prediction for GlimmerHMM_glimmerT_44939-T1
Valid prediction for snap_scaffold_19-snap.863-T1
Valid prediction for snap_scaffold_19-snap.860-T1
Valid prediction for GeneMark_model.78524_t
Valid prediction for GlimmerHMM_glimmerT_44958-T1
Valid prediction for snap_scaffold_19-snap.873-T1
Valid prediction for snap_scaffold_19-snap.844-T1
Valid prediction for GeneMark_model.78528_t
Valid prediction for GlimmerHMM_glimmerT_44959-T1
Valid prediction for snap_scaffold_19-snap.871-T1
Valid prediction for Augustus_model.g29977.t1
Valid prediction for GeneMark_model.78515_t
Valid prediction for GlimmerHMM_glimmerT_44946-T1
Valid prediction for GeneMark_model.78508_t
Valid prediction for GeneMark_model.78484_t
Valid prediction for GlimmerHMM_glimmerT_44945-T1
Valid prediction for GeneMark_model.78506_t
Valid prediction for GlimmerHMM_glimmerT_44940-T1
Valid prediction for snap_scaffold_19-snap.874-T1
Valid prediction for snap_scaffold_19-snap.886-T1
Valid prediction for GlimmerHMM_glimmerT_44935-T1
Valid prediction for snap_scaffold_19-snap.841-T1
Valid prediction for Augustus_model.g29978.t1
Valid prediction for GeneMark_model.78482_t
Valid prediction for GlimmerHMM_glimmerT_44952-T1
Valid prediction for GeneMark_model.78522_t
Valid prediction for GeneMark_model.78488_t
Valid prediction for snap_scaffold_19-snap.882-T1
Valid prediction for GeneMark_model.78478_t
Valid prediction for GlimmerHMM_glimmerT_44957-T1
Valid prediction for snap_scaffold_19-snap.884-T1
Valid prediction for snap_scaffold_19-snap.864-T1
Valid prediction for GeneMark_model.78490_t
Valid prediction for snap_scaffold_19-snap.846-T1
Valid prediction for GeneMark_model.78530_t
Valid prediction for GeneMark_model.78498_t
Valid prediction for snap_scaffold_19-snap.861-T1
Valid prediction for GeneMark_model.78519_t
Valid prediction for GeneMark_model.78538_t
Valid prediction for GeneMark_model.78486_t
Valid prediction for Augustus_model.g29987.t1
Valid prediction for GeneMark_model.78540_t
Valid prediction for snap_scaffold_19-snap.851-T1
Valid prediction for GlimmerHMM_glimmerT_44955-T1
Valid prediction for GeneMark_model.78501_t
Valid prediction for GeneMark_model.78535_t
Valid prediction for snap_scaffold_19-snap.853-T1
Valid prediction for snap_scaffold_19-snap.870-T1
Valid prediction for GlimmerHMM_glimmerT_44936-T1
Valid prediction for Augustus_model.g29990.t1
Valid prediction for GeneMark_model.78502_t
Valid prediction for snap_scaffold_19-snap.867-T1
Valid prediction for GlimmerHMM_glimmerT_44943-T1
Valid prediction for GeneMark_model.78475_t
Valid prediction for Augustus_model.g29984.t1
Valid prediction for GlimmerHMM_glimmerT_44954-T1
Valid prediction for GlimmerHMM_glimmerT_44949-T1
Valid prediction for GeneMark_model.78537_t
Valid prediction for Augustus_model.g29981.t1
Valid prediction for GeneMark_model.78492_t
Valid prediction for GlimmerHMM_glimmerT_44937-T1
Valid prediction for GlimmerHMM_glimmerT_44941-T1
Valid prediction for GeneMark_model.78494_t
Valid prediction for snap_scaffold_19-snap.885-T1
Valid prediction for snap_scaffold_19-snap.878-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.78516_t
Valid prediction for GeneMark_model.78504_t
Valid prediction for GlimmerHMM_glimmerT_44948-T1
Valid prediction for snap_scaffold_19-snap.883-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for GeneMark_model.78534_t
Valid prediction for snap_scaffold_19-snap.852-T1
Valid prediction for GeneMark_model.78491_t
Valid prediction for GeneMark_model.78477_t
Valid prediction for GeneMark_model.78514_t
Valid prediction for Augustus_model.g29979.t1
Valid prediction for GeneMark_model.78539_t
Valid prediction for GlimmerHMM_glimmerT_44950-T1
Valid prediction for snap_scaffold_19-snap.865-T1
Valid prediction for GeneMark_model.78527_t
Valid prediction for snap_scaffold_19-snap.862-T1
Valid prediction for GeneMark_model.78479_t
Valid prediction for snap_scaffold_19-snap.868-T1
Valid prediction for GeneMark_model.78493_t
Valid prediction for GlimmerHMM_glimmerT_44951-T1
Valid prediction for snap_scaffold_19-snap.859-T1
Valid prediction for GeneMark_model.78485_t
Valid prediction for Augustus_model.g29986.t1
Valid prediction for snap_scaffold_19-snap.847-T1
Valid prediction for GlimmerHMM_glimmerT_44956-T1
Valid prediction for GeneMark_model.78497_t
Valid prediction for GeneMark_model.78472_t
Valid prediction for Augustus_model.g29982.t1
Valid prediction for GeneMark_model.78487_t
Valid prediction for GlimmerHMM_glimmerT_44947-T1
Valid prediction for snap_scaffold_19-snap.849-T1
Valid prediction for GeneMark_model.78513_t
Valid prediction for snap_scaffold_19-snap.879-T1
Valid prediction for snap_scaffold_19-snap.872-T1
Valid prediction for Augustus_model.g29989.t1
Valid prediction for GeneMark_model.78536_t
Valid prediction for Augustus_model.g29983.t1
Valid prediction for GeneMark_model.78509_t
Valid prediction for snap_scaffold_19-snap.854-T1
Valid prediction for Augustus_model.g29985.t1
Valid prediction for GlimmerHMM_glimmerT_44942-T1
Valid prediction for GeneMark_model.78481_t
Valid prediction for snap_scaffold_19-snap.869-T1
Valid prediction for snap_scaffold_19-snap.866-T1
Valid prediction for GeneMark_model.78483_t
Valid prediction for GeneMark_model.78520_t
Valid prediction for GlimmerHMM_glimmerT_44938-T1
Valid prediction for GeneMark_model.78489_t
Valid prediction for snap_scaffold_19-snap.845-T1
Valid prediction for GeneMark_model.78505_t
Valid prediction for GeneMark_model.78532_t
Valid prediction for snap_scaffold_19-snap.857-T1
Valid prediction for GeneMark_model.78529_t
Valid prediction for snap_scaffold_19-snap.842-T1
Valid prediction for GeneMark_model.78500_t
Valid prediction for GeneMark_model.78474_t
Valid prediction for snap_scaffold_19-snap.843-T1
Valid prediction for GeneMark_model.78476_t
Valid prediction for GeneMark_model.78525_t
Valid prediction for GeneMark_model.78533_t
Valid prediction for GeneMark_model.78507_t
Valid prediction for GeneMark_model.78521_t
Valid prediction for GlimmerHMM_glimmerT_44944-T1
Valid prediction for GeneMark_model.78541_t
Valid prediction for GeneMark_model.78495_t
Valid prediction for snap_scaffold_19-snap.856-T1
Valid prediction for GeneMark_model.78523_t
Valid prediction for GeneMark_model.78531_t
Valid prediction for GeneMark_model.78510_t
Valid prediction for GlimmerHMM_glimmerT_44953-T1
Valid prediction for snap_scaffold_19-snap.877-T1
Valid prediction for Augustus_model.g29988.t1
Valid prediction for snap_scaffold_19-snap.850-T1
Valid prediction for GeneMark_model.78518_t
Valid prediction for GeneMark_model.78511_t
Valid prediction for snap_scaffold_19-snap.875-T1
Valid prediction for GeneMark_model.78512_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13836, rend_intergenic: 7879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14897, rend_intergenic: 14622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20278, rend_intergenic: 19198  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22455, rend_intergenic: 20966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30605, rend_intergenic: 23511  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35472, rend_intergenic: 33133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43757, rend_intergenic: 36585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49578, rend_intergenic: 44124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56837, rend_intergenic: 53456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68289, rend_intergenic: 63496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85872, rend_intergenic: 72022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88838, rend_intergenic: 87012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96943, rend_intergenic: 91536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104302, rend_intergenic: 99501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118737, rend_intergenic: 104349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119183, rend_intergenic: 118801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121408, rend_intergenic: 119414  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131138, rend_intergenic: 124725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146080, rend_intergenic: 132431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154596, rend_intergenic: 149293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165729, rend_intergenic: 155452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186904, rend_intergenic: 168009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 189392
-exon list size: 854


building trellis

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81.1    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.3    
87.4    
87.5    
87.6    
87.7    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 49 predictions from path traversal
Error with prediction: snap lend_intergenic: 13836, rend_intergenic: 7879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14897, rend_intergenic: 14622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20278, rend_intergenic: 19198  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22455, rend_intergenic: 20966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30605, rend_intergenic: 23511  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35472, rend_intergenic: 33133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43757, rend_intergenic: 36585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49578, rend_intergenic: 44124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56837, rend_intergenic: 53456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68289, rend_intergenic: 63496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85872, rend_intergenic: 72022  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88838, rend_intergenic: 87012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96943, rend_intergenic: 91536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104302, rend_intergenic: 99501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118737, rend_intergenic: 104349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119183, rend_intergenic: 118801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121408, rend_intergenic: 119414  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131138, rend_intergenic: 124725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146080, rend_intergenic: 132431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154596, rend_intergenic: 149293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165729, rend_intergenic: 155452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186904, rend_intergenic: 168009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support