-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_3338964-3611490 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_44891-T1 Valid prediction for snap_scaffold_19-snap.744-T1 Valid prediction for GeneMark_model.78314_t Valid prediction for HiQ_model.g29942.t1 Valid prediction for GeneMark_model.78325_t Valid prediction for snap_scaffold_19-snap.735-T1 Valid prediction for GeneMark_model.78328_t Valid prediction for snap_scaffold_19-snap.767-T1 Valid prediction for GeneMark_model.78317_t Couldn't classify 174080, 174218 Sorry, prediction pasa_asmbl_22119.p1 fails validation. (ATG) CC 169891-169897 GT TGG (GGG) AG 170385-170477 GT AGG (GGG) AG 170861-170924 GT TGG (GGC) AG 171096-171280 GT CGG (GGA) AG 171439-171690 GT TGG (GTT) AG 172175-172271 GT AGG (CTC) AG 172483-172625 GT AGG (GTC) AG 173915-173978 GT TGG (GAC) AG 174080-174218 TG GGT -recovered pasa_asmbl_22119.p1, initial, 169891, 169897 -recovered pasa_asmbl_22119.p1, internal, 170385, 170477 -recovered pasa_asmbl_22119.p1, internal, 170861, 170924 -recovered pasa_asmbl_22119.p1, internal, 171096, 171280 -recovered pasa_asmbl_22119.p1, internal, 171439, 171690 -recovered pasa_asmbl_22119.p1, internal, 172175, 172271 -recovered pasa_asmbl_22119.p1, internal, 172483, 172625 -recovered pasa_asmbl_22119.p1, internal, 173915, 173978 Valid prediction for snap_scaffold_19-snap.764-T1 Valid prediction for GeneMark_model.78369_t Valid prediction for HiQ_model.g29951.t1 Couldn't classify 174481, 174741 Sorry, prediction pasa_asmbl_22121.p1 fails validation. (TCA) TG 174481-174741 GT AGG (GCG) AG 174863-175012 GT TGG (GGT) AG 175307-175447 GT AGG (GAG) AG 175564-175651 GT AGG (TGT) AG 175903-176042 GT TGG (GAC) AG 176956-177137 GT AGG (GCG) AG 177482-178359 GT AGG (GAG) AG 178681-178805 GT AGG (GTG) AG 178953-179231 GT AGG (GTG) AG 179626-179819 GT GAG (GTC) AG 180668-180717 GT AGG (AGT) AG 181418-181584 GT AGG (CCC) AG 181930-181975 GT AGG (AGA) AG 182417-182538 GT AGG (GCT) AG 182673-182769 GT AGG (TGT) AG 182916-183110 GT ATG (GGT) AG 183825-183832 TC AGT -recovered pasa_asmbl_22121.p1, terminal, 183825, 183832 -recovered pasa_asmbl_22121.p1, internal, 174863, 175012 -recovered pasa_asmbl_22121.p1, internal, 175307, 175447 -recovered pasa_asmbl_22121.p1, internal, 175564, 175651 -recovered pasa_asmbl_22121.p1, internal, 175903, 176042 -recovered pasa_asmbl_22121.p1, internal, 176956, 177137 -recovered pasa_asmbl_22121.p1, internal, 177482, 178359 -recovered pasa_asmbl_22121.p1, internal, 178681, 178805 -recovered pasa_asmbl_22121.p1, internal, 178953, 179231 -recovered pasa_asmbl_22121.p1, internal, 179626, 179819 -recovered pasa_asmbl_22121.p1, internal, 180668, 180717 -recovered pasa_asmbl_22121.p1, internal, 181418, 181584 -recovered pasa_asmbl_22121.p1, internal, 181930, 181975 -recovered pasa_asmbl_22121.p1, internal, 182417, 182538 -recovered pasa_asmbl_22121.p1, internal, 182673, 182769 -recovered pasa_asmbl_22121.p1, internal, 182916, 183110 Couldn't classify 188531, 188698 Sorry, prediction pasa_asmbl_22124.p1 fails validation. (ATC) AG 188531-188698 GT AGG (AAC) AG 189144-189356 GT CGG (CCG) AG 189568-189686 GT AGG (GAC) AG 189838-189920 GT AGG (CTC) AG 190100-190183 GT TGG (GGA) AG 190536-190709 GT CGG (ACT) AG 191153-191316 GG AGG -recovered pasa_asmbl_22124.p1, terminal, 191153, 191316 -recovered pasa_asmbl_22124.p1, internal, 188531, 188698 -recovered pasa_asmbl_22124.p1, internal, 189144, 189356 -recovered pasa_asmbl_22124.p1, internal, 189568, 189686 -recovered pasa_asmbl_22124.p1, internal, 189838, 189920 -recovered pasa_asmbl_22124.p1, internal, 190100, 190183 -recovered pasa_asmbl_22124.p1, internal, 190536, 190709 Valid prediction for snap_scaffold_19-snap.727-T1 Valid prediction for CodingQuarry_transcript_25574-T1 Valid prediction for HiQ_model.g29944.t1 Valid prediction for GeneMark_model.78305_t Valid prediction for GeneMark_model.78357_t Valid prediction for GlimmerHMM_glimmerT_44882-T1 Couldn't classify 188052, 188111 Sorry, prediction pasa_asmbl_22123.p1 fails validation. (ATG) GC 187118-187210 GT AGG (GTG) AG 187505-187611 GT AAG (GGC) AG 187727-187910 GT AGG (AAA) AG 188052-188111 AT CCA -recovered pasa_asmbl_22123.p1, initial, 187118, 187210 -recovered pasa_asmbl_22123.p1, internal, 187505, 187611 -recovered pasa_asmbl_22123.p1, internal, 187727, 187910 Valid prediction for snap_scaffold_19-snap.759-T1 Valid prediction for GeneMark_model.78356_t Valid prediction for snap_scaffold_19-snap.723-T1 Valid prediction for snap_scaffold_19-snap.772-T1 Valid prediction for GeneMark_model.78365_t Valid prediction for snap_scaffold_19-snap.725-T1 Valid prediction for GlimmerHMM_glimmerT_44892-T1 Valid prediction for GeneMark_model.78344_t Valid prediction for GeneMark_model.78295_t Valid prediction for GlimmerHMM_glimmerT_44890-T1 Valid prediction for GeneMark_model.78315_t Valid prediction for GlimmerHMM_glimmerT_44871-T1 Valid prediction for Augustus_model.g29933.t1 Valid prediction for GeneMark_model.78335_t Valid prediction for GeneMark_model.78284_t Valid prediction for snap_scaffold_19-snap.770-T1 Couldn't classify 210901, 210959 Sorry, prediction pasa_asmbl_22125.p1 fails validation. (TTT) GC 210901-210959 GT AGG (TGA) AG 212251-212319 GT AGG (GTT) AG 212442-212617 GT GGG (CCA) AG 213037-213116 GT AGG (AGC) AG 213546-213734 GT AGG (ATG) AG 214572-214776 GT AGG (GCC) AG 216040-216182 GT GGG (CAG) AG 216497-216634 GT GGG (GTG) AG 218018-218486 GT AGG (GCT) AG 218668-218854 GT AAG (GGT) AG 219152-219334 GT AGG (GCG) AG 219715-219868 GT AGG (GGG) AG 220228-220284 TC AGT -recovered pasa_asmbl_22125.p1, initial, 214572, 214776 -recovered pasa_asmbl_22125.p1, terminal, 220228, 220284 -recovered pasa_asmbl_22125.p1, internal, 212251, 212319 -recovered pasa_asmbl_22125.p1, internal, 212442, 212617 -recovered pasa_asmbl_22125.p1, internal, 213037, 213116 -recovered pasa_asmbl_22125.p1, internal, 213546, 213734 -recovered pasa_asmbl_22125.p1, internal, 214572, 214776 -recovered pasa_asmbl_22125.p1, internal, 216040, 216182 -recovered pasa_asmbl_22125.p1, internal, 216497, 216634 -recovered pasa_asmbl_22125.p1, internal, 218018, 218486 -recovered pasa_asmbl_22125.p1, internal, 218668, 218854 -recovered pasa_asmbl_22125.p1, internal, 219152, 219334 -recovered pasa_asmbl_22125.p1, internal, 219715, 219868 Valid prediction for snap_scaffold_19-snap.754-T1 Valid prediction for pasa_asmbl_22117.p1 Valid prediction for GeneMark_model.78310_t Valid prediction for Augustus_model.g29945.t1 Valid prediction for GeneMark_model.78299_t Valid prediction for snap_scaffold_19-snap.757-T1 Valid prediction for GeneMark_model.78362_t Valid prediction for snap_scaffold_19-snap.728-T1 Valid prediction for snap_scaffold_19-snap.733-T1 Valid prediction for GeneMark_model.78352_t Valid prediction for CodingQuarry_transcript_25572-T1 Valid prediction for GeneMark_model.78337_t Valid prediction for CodingQuarry_transcript_25573-T1 Valid prediction for snap_scaffold_19-snap.773-T1 Valid prediction for GlimmerHMM_glimmerT_44886-T1 Valid prediction for GlimmerHMM_glimmerT_44870-T1 Valid prediction for CodingQuarry_transcript_25569-T1 Valid prediction for GeneMark_model.78280_t Valid prediction for GeneMark_model.78303_t Valid prediction for GeneMark_model.78363_t Valid prediction for GeneMark_model.78286_t Valid prediction for GeneMark_model.78347_t Valid prediction for GeneMark_model.78342_t Valid prediction for GeneMark_model.78349_t Valid prediction for Augustus_model.g29935.t1 Valid prediction for snap_scaffold_19-snap.753-T1 Valid prediction for GlimmerHMM_glimmerT_44879-T1 Valid prediction for GeneMark_model.78290_t Valid prediction for GlimmerHMM_glimmerT_44880-T1 Valid prediction for HiQ_model.g29950.t1 Valid prediction for GeneMark_model.78327_t Valid prediction for GeneMark_model.78333_t Valid prediction for snap_scaffold_19-snap.747-T1 Valid prediction for snap_scaffold_19-snap.739-T1 Valid prediction for GeneMark_model.78367_t Valid prediction for snap_scaffold_19-snap.743-T1 Valid prediction for GeneMark_model.78371_t Valid prediction for GeneMark_model.78301_t Valid prediction for GlimmerHMM_glimmerT_44875-T1 Valid prediction for snap_scaffold_19-snap.740-T1 Valid prediction for GlimmerHMM_glimmerT_44883-T1 Valid prediction for GeneMark_model.78331_t Valid prediction for GeneMark_model.78355_t Valid prediction for Augustus_model.g29947.t1 Valid prediction for snap_scaffold_19-snap.730-T1 Valid prediction for GlimmerHMM_glimmerT_44888-T1 Valid prediction for GeneMark_model.78321_t Valid prediction for GeneMark_model.78281_t Valid prediction for snap_scaffold_19-snap.774-T1 Valid prediction for GeneMark_model.78318_t Valid prediction for GeneMark_model.78307_t Valid prediction for GeneMark_model.78340_t Valid prediction for snap_scaffold_19-snap.731-T1 Valid prediction for GlimmerHMM_glimmerT_44860-T1 Valid prediction for snap_scaffold_19-snap.769-T1 Valid prediction for GeneMark_model.78313_t Valid prediction for Augustus_model.g29948.t1 Valid prediction for GlimmerHMM_glimmerT_44887-T1 Valid prediction for GeneMark_model.78360_t Valid prediction for GlimmerHMM_glimmerT_44878-T1 Valid prediction for Augustus_model.g29934.t1 Valid prediction for GlimmerHMM_glimmerT_44867-T1 Valid prediction for snap_scaffold_19-snap.750-T1 Valid prediction for snap_scaffold_19-snap.768-T1 Valid prediction for GeneMark_model.78329_t Valid prediction for GlimmerHMM_glimmerT_44861-T1 Valid prediction for snap_scaffold_19-snap.722-T1 Valid prediction for GeneMark_model.78292_t Valid prediction for snap_scaffold_19-snap.763-T1 Valid prediction for GeneMark_model.78359_t Valid prediction for Augustus_model.g29936.t1 Valid prediction for snap_scaffold_19-snap.748-T1 Valid prediction for GeneMark_model.78374_t Valid prediction for GeneMark_model.78288_t Valid prediction for GeneMark_model.78297_t Valid prediction for GeneMark_model.78294_t Valid prediction for GeneMark_model.78309_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.78298_t Valid prediction for CodingQuarry_transcript_25567-T1 Valid prediction for GeneMark_model.78287_t Valid prediction for GeneMark_model.78336_t Valid prediction for GeneMark_model.78373_t Valid prediction for GlimmerHMM_glimmerT_44868-T1 Valid prediction for GeneMark_model.78308_t Valid prediction for GeneMark_model.78368_t Valid prediction for GeneMark_model.78332_t Valid prediction for CodingQuarry_transcript_25571-T1 Valid prediction for GeneMark_model.78283_t Valid prediction for GeneMark_model.78320_t Valid prediction for GeneMark_model.78322_t Valid prediction for GlimmerHMM_glimmerT_44889-T1 Valid prediction for snap_scaffold_19-snap.737-T1 Valid prediction for CodingQuarry_transcript_25570-T1 Valid prediction for GeneMark_model.78341_t Valid prediction for GeneMark_model.78330_t Valid prediction for GeneMark_model.78348_t Couldn't classify 186449, 186559 Couldn't classify 188317, 188498 Sorry, prediction pasa_asmbl_21311.p1 fails validation. (TTA) AG 186449-186559 GT TGG (GAT) AG 187958-188045 GT GGG (ACT) AG 188317-188498 AG ACA -recovered pasa_asmbl_21311.p1, internal, 186449, 186559 -recovered pasa_asmbl_21311.p1, internal, 187958, 188045 Valid prediction for snap_scaffold_19-snap.721-T1 Valid prediction for GeneMark_model.78316_t Valid prediction for snap_scaffold_19-snap.746-T1 Couldn't classify 113094, 113104 Sorry, prediction pasa_asmbl_21316.p1 fails validation. (ATG) AC 111468-111512 GT AGG (GTT) AG 111627-111750 GT CTG (ACA) AG 111912-111975 GT GGG (TGA) AG 112098-112174 GT AGG (CTG) AG 112351-112550 GT AGG (TCA) AG 112746-112890 GT GGG (GCT) AG 113094-113104 CT AGC -recovered pasa_asmbl_21316.p1, initial, 111468, 111512 -recovered pasa_asmbl_21316.p1, internal, 111627, 111750 -recovered pasa_asmbl_21316.p1, internal, 111912, 111975 -recovered pasa_asmbl_21316.p1, internal, 112098, 112174 -recovered pasa_asmbl_21316.p1, internal, 112351, 112550 -recovered pasa_asmbl_21316.p1, internal, 112746, 112890 Valid prediction for snap_scaffold_19-snap.755-T1 Valid prediction for GeneMark_model.78343_t Valid prediction for Augustus_model.g29953.t1 Valid prediction for Augustus_model.g29952.t1 Valid prediction for GeneMark_model.78364_t Valid prediction for GeneMark_model.78370_t Valid prediction for GlimmerHMM_glimmerT_44884-T1 Valid prediction for snap_scaffold_19-snap.738-T1 Valid prediction for GeneMark_model.78366_t Valid prediction for GlimmerHMM_glimmerT_44874-T1 Valid prediction for GeneMark_model.78302_t Valid prediction for snap_scaffold_19-snap.771-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for Augustus_model.g29940.t1 Valid prediction for GeneMark_model.78361_t Valid prediction for GeneMark_model.78353_t Valid prediction for GeneMark_model.78350_t Valid prediction for GeneMark_model.78282_t Valid prediction for snap_scaffold_19-snap.765-T1 Valid prediction for GeneMark_model.78319_t Valid prediction for GeneMark_model.78351_t Valid prediction for GlimmerHMM_glimmerT_44895-T1 Valid prediction for GlimmerHMM_glimmerT_44893-T1 Valid prediction for GlimmerHMM_glimmerT_44863-T1 Valid prediction for Augustus_model.g29946.t1 Valid prediction for GeneMark_model.78345_t Valid prediction for snap_scaffold_19-snap.761-T1 Valid prediction for GeneMark_model.78291_t Valid prediction for GeneMark_model.78306_t Valid prediction for GeneMark_model.78358_t Valid prediction for snap_scaffold_19-snap.726-T1 Sorry, intron length (6) is less than minimum required (10) Valid prediction for snap_scaffold_19-snap.752-T1 Valid prediction for GlimmerHMM_glimmerT_44873-T1 Valid prediction for GlimmerHMM_glimmerT_44885-T1 Valid prediction for GlimmerHMM_glimmerT_44862-T1 Valid prediction for GeneMark_model.78334_t Valid prediction for pasa_asmbl_21961.p1 Valid prediction for pasa_asmbl_21319.p1 Valid prediction for CodingQuarry_transcript_25568-T1 Valid prediction for Augustus_model.g29937.t1 Valid prediction for GlimmerHMM_glimmerT_44872-T1 Couldn't classify 112881, 112890 Sorry, prediction pasa_asmbl_21315.p1 fails validation. (AAA) CC 112881-112890 GT GGG (GCT) AG 113094-113215 GT AGG (TCA) AG 113300-113376 GT AAG (GTT) AG 113511-113577 GT AGG (CTC) AG 114021-114167 GT AGG (GTG) AG 114323-114462 GT AGG (GGA) AG 114564-114681 TC GAT -recovered pasa_asmbl_21315.p1, terminal, 114564, 114681 -recovered pasa_asmbl_21315.p1, internal, 113094, 113215 -recovered pasa_asmbl_21315.p1, internal, 113300, 113376 -recovered pasa_asmbl_21315.p1, internal, 113511, 113577 -recovered pasa_asmbl_21315.p1, internal, 114021, 114167 -recovered pasa_asmbl_21315.p1, internal, 114323, 114462 Valid prediction for snap_scaffold_19-snap.762-T1 Valid prediction for GlimmerHMM_glimmerT_44877-T1 Valid prediction for snap_scaffold_19-snap.729-T1 Valid prediction for GeneMark_model.78326_t Valid prediction for GlimmerHMM_glimmerT_44876-T1 Valid prediction for pasa_asmbl_21314.p1 Valid prediction for GeneMark_model.78311_t Valid prediction for snap_scaffold_19-snap.775-T1 Valid prediction for snap_scaffold_19-snap.724-T1 Valid prediction for snap_scaffold_19-snap.751-T1 Valid prediction for GeneMark_model.78312_t Valid prediction for GeneMark_model.78324_t Valid prediction for Augustus_model.g29939.t1 Valid prediction for HiQ_model.g29949.t1 Valid prediction for GlimmerHMM_glimmerT_44865-T1 Valid prediction for snap_scaffold_19-snap.742-T1 Valid prediction for snap_scaffold_19-snap.732-T1 Valid prediction for snap_scaffold_19-snap.734-T1 Valid prediction for GlimmerHMM_glimmerT_44894-T1 Valid prediction for GlimmerHMM_glimmerT_44866-T1 Valid prediction for snap_scaffold_19-snap.741-T1 Valid prediction for GlimmerHMM_glimmerT_44881-T1 Valid prediction for Augustus_model.g29943.t1 Valid prediction for snap_scaffold_19-snap.766-T1 Valid prediction for HiQ_model.g29941.t1 Valid prediction for GlimmerHMM_glimmerT_44869-T1 Valid prediction for snap_scaffold_19-snap.745-T1 Valid prediction for GeneMark_model.78372_t Valid prediction for GeneMark_model.78300_t Valid prediction for snap_scaffold_19-snap.736-T1 Valid prediction for GeneMark_model.78338_t Valid prediction for GeneMark_model.78346_t Valid prediction for snap_scaffold_19-snap.749-T1 Valid prediction for snap_scaffold_19-snap.776-T1 Valid prediction for GeneMark_model.78304_t Valid prediction for snap_scaffold_19-snap.760-T1 Valid prediction for snap_scaffold_19-snap.758-T1 Valid prediction for GeneMark_model.78285_t Valid prediction for GeneMark_model.78354_t Valid prediction for GeneMark_model.78375_t Valid prediction for GlimmerHMM_glimmerT_44864-T1 Couldn't classify 108069, 108402 Couldn't classify 109863, 109966 Sorry, prediction pasa_asmbl_21966.p1 fails validation. (CCC) AG 108069-108402 GT AGG (TTG) AG 108657-108761 GT AGG (CAG) AG 108858-109043 GT GGG (TGG) AG 109142-109387 GT GGG (GAG) AG 109863-109966 GT AGG -recovered pasa_asmbl_21966.p1, internal, 108069, 108402 -recovered pasa_asmbl_21966.p1, internal, 108657, 108761 -recovered pasa_asmbl_21966.p1, internal, 108858, 109043 -recovered pasa_asmbl_21966.p1, internal, 109142, 109387 -recovered pasa_asmbl_21966.p1, internal, 109863, 109966 Valid prediction for GeneMark_model.78296_t Valid prediction for GeneMark_model.78339_t Valid prediction for snap_scaffold_19-snap.756-T1 Valid prediction for Augustus_model.g29938.t1 Valid prediction for GeneMark_model.78289_t Valid prediction for GeneMark_model.78293_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13753, rend_intergenic: 1601 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33460, rend_intergenic: 13986 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55611, rend_intergenic: 34592 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57499, rend_intergenic: 55724 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63103, rend_intergenic: 57561 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73864, rend_intergenic: 72045 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 94927, rend_intergenic: 74451 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103570, rend_intergenic: 95109 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109974, rend_intergenic: 103771 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114545, rend_intergenic: 111435 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123475, rend_intergenic: 114947 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131549, rend_intergenic: 123534 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144989, rend_intergenic: 135708 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 150517, rend_intergenic: 148128 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155554, rend_intergenic: 152282 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 164441, rend_intergenic: 158181 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175933, rend_intergenic: 166164 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184716, rend_intergenic: 175970 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190373, rend_intergenic: 185838 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 200059, rend_intergenic: 193402 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 206527, rend_intergenic: 203865 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216859, rend_intergenic: 213522 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 221085, rend_intergenic: 218000 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 226447, rend_intergenic: 223141 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 250917, rend_intergenic: 229690 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 251776, rend_intergenic: 251019 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 267247, rend_intergenic: 254266 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 272527 -exon list size: 1270 building trellis 0.1 0.2 0.2 0.3 0.4 0.5 0.6 0.6 0.7 0.8 0.9 0.9 1.0 1.1 1.2 1.3 1.3 1.4 1.5 1.6 1.7 1.7 1.8 1.9 2.0 2.0 2.1 2.2 2.3 2.4 2.4 2.5 2.6 2.7 2.8 2.8 2.9 3.0 3.1 3.1 3.2 3.3 3.4 3.5 3.5 3.6 3.7 3.8 3.9 3.9 4.0 4.1 4.2 4.2 4.3 4.4 4.5 4.6 4.6 4.7 4.8 4.9 5.0 5.0 5.1 5.2 5.3 5.3 5.4 5.5 5.6 5.7 5.7 5.8 5.9 6.0 6.1 6.1 6.2 6.3 6.4 6.4 6.5 6.6 6.7 6.8 6.8 6.9 7.0 7.1 7.2 7.2 7.3 7.4 7.5 7.5 7.6 7.7 7.8 7.9 7.9 8.0 8.1 8.2 8.3 8.3 8.4 8.5 8.6 8.6 8.7 8.8 8.9 9.0 9.0 9.1 9.2 9.3 9.4 9.4 9.5 9.6 9.7 9.7 9.8 9.9 10.0 10.1 10.1 10.2 10.3 10.4 10.5 10.5 10.6 10.7 10.8 10.8 10.9 11.0 11.1 11.2 11.2 11.3 11.4 11.5 11.6 11.6 11.7 11.8 11.9 11.9 12.0 12.1 12.2 12.3 12.3 12.4 12.5 12.6 12.7 12.7 12.8 12.9 13.0 13.1 13.1 13.2 13.3 13.4 13.4 13.5 13.6 13.7 13.8 13.8 13.9 14.0 14.1 14.2 14.2 14.3 14.4 14.5 14.5 14.6 14.7 14.8 14.9 14.9 15.0 15.1 15.2 15.3 15.3 15.4 15.5 15.6 15.6 15.7 15.8 15.9 16.0 16.0 16.1 16.2 16.3 16.4 16.4 16.5 16.6 16.7 16.7 16.8 16.9 17.0 17.1 17.1 17.2 17.3 17.4 17.5 17.5 17.6 17.7 17.8 17.8 17.9 18.0 18.1 18.2 18.2 18.3 18.4 18.5 18.6 18.6 18.7 18.8 18.9 18.9 19.0 19.1 19.2 19.3 19.3 19.4 19.5 19.6 19.7 19.7 19.8 19.9 20.0 20.0 20.1 20.2 20.3 20.4 20.4 20.5 20.6 20.7 20.8 20.8 20.9 21.0 21.1 21.1 21.2 21.3 21.4 21.5 21.5 21.6 21.7 21.8 21.9 21.9 22.0 22.1 22.2 22.2 22.3 22.4 22.5 22.6 22.6 22.7 22.8 22.9 23.0 23.0 23.1 23.2 23.3 23.3 23.4 23.5 23.6 23.7 23.7 23.8 23.9 24.0 24.1 24.1 24.2 24.3 24.4 24.4 24.5 24.6 24.7 24.8 24.8 24.9 25.0 25.1 25.2 25.2 25.3 25.4 25.5 25.6 25.6 25.7 25.8 25.9 25.9 26.0 26.1 26.2 26.3 26.3 26.4 26.5 26.6 26.7 26.7 26.8 26.9 27.0 27.0 27.1 27.2 27.3 27.4 27.4 27.5 27.6 27.7 27.8 27.8 27.9 28.0 28.1 28.1 28.2 28.3 28.4 28.5 28.5 28.6 28.7 28.8 28.9 28.9 29.0 29.1 29.2 29.2 29.3 29.4 29.5 29.6 29.6 29.7 29.8 29.9 30.0 30.0 30.1 30.2 30.3 30.3 30.4 30.5 30.6 30.7 30.7 30.8 30.9 31.0 31.1 31.1 31.2 31.3 31.4 31.4 31.5 31.6 31.7 31.8 31.8 31.9 32.0 32.1 32.2 32.2 32.3 32.4 32.5 32.5 32.6 32.7 32.8 32.9 32.9 33.0 33.1 33.2 33.3 33.3 33.4 33.5 33.6 33.6 33.7 33.8 33.9 34.0 34.0 34.1 34.2 34.3 34.4 34.4 34.5 34.6 34.7 34.7 34.8 34.9 35.0 35.1 35.1 35.2 35.3 35.4 35.5 35.5 35.6 35.7 35.8 35.8 35.9 36.0 36.1 36.2 36.2 36.3 36.4 36.5 36.6 36.6 36.7 36.8 36.9 36.9 37.0 37.1 37.2 37.3 37.3 37.4 37.5 37.6 37.7 37.7 37.8 37.9 38.0 38.1 38.1 38.2 38.3 38.4 38.4 38.5 38.6 38.7 38.8 38.8 38.9 39.0 39.1 39.2 39.2 39.3 39.4 39.5 39.5 39.6 39.7 39.8 39.9 39.9 40.0 40.1 40.2 40.3 40.3 40.4 40.5 40.6 40.6 40.7 40.8 40.9 41.0 41.0 41.1 41.2 41.3 41.4 41.4 41.5 41.6 41.7 41.7 41.8 41.9 42.0 42.1 42.1 42.2 42.3 42.4 42.5 42.5 42.6 42.7 42.8 42.8 42.9 43.0 43.1 43.2 43.2 43.3 43.4 43.5 43.6 43.6 43.7 43.8 43.9 43.9 44.0 44.1 44.2 44.3 44.3 44.4 44.5 44.6 44.7 44.7 44.8 44.9 45.0 45.0 45.1 45.2 45.3 45.4 45.4 45.5 45.6 45.7 45.8 45.8 45.9 46.0 46.1 46.1 46.2 46.3 46.4 46.5 46.5 46.6 46.7 46.8 46.9 46.9 47.0 47.1 47.2 47.2 47.3 47.4 47.5 47.6 47.6 47.7 47.8 47.9 48.0 48.0 48.1 48.2 48.3 48.3 48.4 48.5 48.6 48.7 48.7 48.8 48.9 49.0 49.1 49.1 49.2 49.3 49.4 49.4 49.5 49.6 49.7 49.8 49.8 49.9 50.0 50.1 50.2 50.2 50.3 50.4 50.5 50.6 50.6 50.7 50.8 50.9 50.9 51.0 51.1 51.2 51.3 51.3 51.4 51.5 51.6 51.7 51.7 51.8 51.9 52.0 52.0 52.1 52.2 52.3 52.4 52.4 52.5 52.6 52.7 52.8 52.8 52.9 53.0 53.1 53.1 53.2 53.3 53.4 53.5 53.5 53.6 53.7 53.8 53.9 53.9 54.0 54.1 54.2 54.2 54.3 54.4 54.5 54.6 54.6 54.7 54.8 54.9 55.0 55.0 55.1 55.2 55.3 55.3 55.4 55.5 55.6 55.7 55.7 55.8 55.9 56.0 56.1 56.1 56.2 56.3 56.4 56.4 56.5 56.6 56.7 56.8 56.8 56.9 57.0 57.1 57.2 57.2 57.3 57.4 57.5 57.5 57.6 57.7 57.8 57.9 57.9 58.0 58.1 58.2 58.3 58.3 58.4 58.5 58.6 58.6 58.7 58.8 58.9 59.0 59.0 59.1 59.2 59.3 59.4 59.4 59.5 59.6 59.7 59.7 59.8 59.9 60.0 60.1 60.1 60.2 60.3 60.4 60.5 60.5 60.6 60.7 60.8 60.8 60.9 61.0 61.1 61.2 61.2 61.3 61.4 61.5 61.6 61.6 61.7 61.8 61.9 61.9 62.0 62.1 62.2 62.3 62.3 62.4 62.5 62.6 62.7 62.7 62.8 62.9 63.0 63.1 63.1 63.2 63.3 63.4 63.4 63.5 63.6 63.7 63.8 63.8 63.9 64.0 64.1 64.2 64.2 64.3 64.4 64.5 64.5 64.6 64.7 64.8 64.9 64.9 65.0 65.1 65.2 65.3 65.3 65.4 65.5 65.6 65.6 65.7 65.8 65.9 66.0 66.0 66.1 66.2 66.3 66.4 66.4 66.5 66.6 66.7 66.7 66.8 66.9 67.0 67.1 67.1 67.2 67.3 67.4 67.5 67.5 67.6 67.7 67.8 67.8 67.9 68.0 68.1 68.2 68.2 68.3 68.4 68.5 68.6 68.6 68.7 68.8 68.9 68.9 69.0 69.1 69.2 69.3 69.3 69.4 69.5 69.6 69.7 69.7 69.8 69.9 70.0 70.0 70.1 70.2 70.3 70.4 70.4 70.5 70.6 70.7 70.8 70.8 70.9 71.0 71.1 71.1 71.2 71.3 71.4 71.5 71.5 71.6 71.7 71.8 71.9 71.9 72.0 72.1 72.2 72.2 72.3 72.4 72.5 72.6 72.6 72.7 72.8 72.9 73.0 73.0 73.1 73.2 73.3 73.3 73.4 73.5 73.6 73.7 73.7 73.8 73.9 74.0 74.1 74.1 74.2 74.3 74.4 74.4 74.5 74.6 74.7 74.8 74.8 74.9 75.0 75.1 75.2 75.2 75.3 75.4 75.5 75.6 75.6 75.7 75.8 75.9 75.9 76.0 76.1 76.2 76.3 76.3 76.4 76.5 76.6 76.7 76.7 76.8 76.9 77.0 77.0 77.1 77.2 77.3 77.4 77.4 77.5 77.6 77.7 77.8 77.8 77.9 78.0 78.1 78.1 78.2 78.3 78.4 78.5 78.5 78.6 78.7 78.8 78.9 78.9 79.0 79.1 79.2 79.2 79.3 79.4 79.5 79.6 79.6 79.7 79.8 79.9 80.0 80.0 80.1 80.2 80.3 80.3 80.4 80.5 80.6 80.7 80.7 80.8 80.9 81.0 81.1 81.1 81.2 81.3 81.4 81.4 81.5 81.6 81.7 81.8 81.8 81.9 82.0 82.1 82.2 82.2 82.3 82.4 82.5 82.5 82.6 82.7 82.8 82.9 82.9 83.0 83.1 83.2 83.3 83.3 83.4 83.5 83.6 83.6 83.7 83.8 83.9 84.0 84.0 84.1 84.2 84.3 84.4 84.4 84.5 84.6 84.7 84.7 84.8 84.9 85.0 85.1 85.1 85.2 85.3 85.4 85.5 85.5 85.6 85.7 85.8 85.8 85.9 86.0 86.1 86.2 86.2 86.3 86.4 86.5 86.6 86.6 86.7 86.8 86.9 86.9 87.0 87.1 87.2 87.3 87.3 87.4 87.5 87.6 87.7 87.7 87.8 87.9 88.0 88.1 88.1 88.2 88.3 88.4 88.4 88.5 88.6 88.7 88.8 88.8 88.9 89.0 89.1 89.2 89.2 89.3 89.4 89.5 89.5 89.6 89.7 89.8 89.9 89.9 90.0 90.1 90.2 90.3 90.3 90.4 90.5 90.6 90.6 90.7 90.8 90.9 91.0 91.0 91.1 91.2 91.3 91.4 91.4 91.5 91.6 91.7 91.7 91.8 91.9 92.0 92.1 92.1 92.2 92.3 92.4 92.5 92.5 92.6 92.7 92.8 92.8 92.9 93.0 93.1 93.2 93.2 93.3 93.4 93.5 93.6 93.6 93.7 93.8 93.9 93.9 94.0 94.1 94.2 94.3 94.3 94.4 94.5 94.6 94.7 94.7 94.8 94.9 95.0 95.0 95.1 95.2 95.3 95.4 95.4 95.5 95.6 95.7 95.8 95.8 95.9 96.0 96.1 96.1 96.2 96.3 96.4 96.5 96.5 96.6 96.7 96.8 96.9 96.9 97.0 97.1 97.2 97.2 97.3 97.4 97.5 97.6 97.6 97.7 97.8 97.9 98.0 98.0 98.1 98.2 98.3 98.3 98.4 98.5 98.6 98.7 98.7 98.8 98.9 99.0 99.1 99.1 99.2 99.3 99.4 99.4 99.5 99.6 99.7 99.8 99.8 99.9 -found 49 predictions from path traversal Error with prediction: snap lend_intergenic: 13753, rend_intergenic: 1601 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33460, rend_intergenic: 13986 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55611, rend_intergenic: 34592 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57499, rend_intergenic: 55724 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63103, rend_intergenic: 57561 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73864, rend_intergenic: 72045 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 94927, rend_intergenic: 74451 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103570, rend_intergenic: 95109 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109974, rend_intergenic: 103771 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114545, rend_intergenic: 111435 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123475, rend_intergenic: 114947 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131549, rend_intergenic: 123534 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144989, rend_intergenic: 135708 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 150517, rend_intergenic: 148128 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155554, rend_intergenic: 152282 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 164441, rend_intergenic: 158181 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175933, rend_intergenic: 166164 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184716, rend_intergenic: 175970 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190373, rend_intergenic: 185838 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 200059, rend_intergenic: 193402 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 206527, rend_intergenic: 203865 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216859, rend_intergenic: 213522 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 221085, rend_intergenic: 218000 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 226447, rend_intergenic: 223141 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 250917, rend_intergenic: 229690 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 251776, rend_intergenic: 251019 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 267247, rend_intergenic: 254266 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 22 predictions persist after filtering for low support