-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_3047006-3340563 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 222113, 222146 Sorry, prediction pasa_asmbl_22113.p1 fails validation. (ACT) CC 222113-222146 GT GGG (CCA) AG 223960-224025 GT GGG (CAA) AG 225178-225252 GT TGG (GGT) AG 226782-226850 GT TGG (ACA) AG 227121-227246 GT TGG (GCA) AG 227392-227481 GT GGG (CTC) AG 227792-228001 GT AGG (AGT) AG 228297-228402 GT AGG (CTA) AG 229270-229349 GT AGG (CGG) AG 231012-231041 GT AGG (GAA) AG 231521-231679 GT CGG (GGA) AG 231804-231926 GT AGG (GTT) AG 232071-232186 GA AAG -recovered pasa_asmbl_22113.p1, terminal, 232071, 232186 -recovered pasa_asmbl_22113.p1, internal, 223960, 224025 -recovered pasa_asmbl_22113.p1, internal, 225178, 225252 -recovered pasa_asmbl_22113.p1, internal, 226782, 226850 -recovered pasa_asmbl_22113.p1, internal, 227121, 227246 -recovered pasa_asmbl_22113.p1, internal, 227392, 227481 -recovered pasa_asmbl_22113.p1, internal, 227792, 228001 -recovered pasa_asmbl_22113.p1, internal, 228297, 228402 -recovered pasa_asmbl_22113.p1, internal, 229270, 229349 -recovered pasa_asmbl_22113.p1, internal, 231012, 231041 -recovered pasa_asmbl_22113.p1, internal, 231521, 231679 -recovered pasa_asmbl_22113.p1, internal, 231804, 231926 Valid prediction for GeneMark_model.78270_t Valid prediction for snap_scaffold_19-snap.686-T1 Valid prediction for snap_scaffold_19-snap.679-T1 Valid prediction for GeneMark_model.78250_t Valid prediction for GeneMark_model.78265_t Couldn't classify 84926, 84931 Sorry, prediction GeneMark_model.78233_t fails validation. (ATG) GG 84466-84485 GC GAG (TAT) AG 84597-84605 GT ATG (ACA) AG 84682-84777 GT AAG (GAG) AG 84895-84900 GT ACG (GAA) AG 84926-84931 GT AAG -recovered GeneMark_model.78233_t, initial, 84466, 84485 -recovered GeneMark_model.78233_t, internal, 84597, 84605 -recovered GeneMark_model.78233_t, internal, 84682, 84777 -recovered GeneMark_model.78233_t, internal, 84895, 84900 -recovered GeneMark_model.78233_t, internal, 84926, 84931 Valid prediction for snap_scaffold_19-snap.675-T1 Couldn't classify 154870, 154991 Sorry, prediction pasa_asmbl_22108.p1 fails validation. (TAT) GG 154870-154991 GT CCG (GCC) AG 156978-157070 GT GAG (AGC) AG 159988-160181 GT AGG (GTT) AG 160695-160741 GT CGG (GAG) AG 160968-161011 GT AGG (ACC) AG 161135-161203 GT GAG (GTA) AG 161376-161526 GT AGG (AAC) AG 162234-162377 CC GAC add_exon() Sorry, pasa_asmbl_22108.p1 156978-157070-terminal-1 is invalid. -recovered pasa_asmbl_22108.p1, terminal, 156978, 157070 -recovered pasa_asmbl_22108.p1, terminal, 162234, 162377 -recovered pasa_asmbl_22108.p1, internal, 156978, 157070 -recovered pasa_asmbl_22108.p1, internal, 159988, 160181 -recovered pasa_asmbl_22108.p1, internal, 160695, 160741 -recovered pasa_asmbl_22108.p1, internal, 160968, 161011 -recovered pasa_asmbl_22108.p1, internal, 161135, 161203 -recovered pasa_asmbl_22108.p1, internal, 161376, 161526 Couldn't classify 104082, 104166 Sorry, prediction GeneMark_model.78235_t fails validation. (GAG) AG 104082-104166 GT TTG (AGC) AG 105406-105500 GT AGG (GCA) AG 105530-105586 GT CCG (TGT) AG 105889-105927 GT GAG (CGT) AG 106041-106061 GT GCG (GAG) AG 106180-106236 GC GAG (TCA) AG 106278-106511 GC AGG (GCG) AG 106628-106786 GT AGG (GGG) AG 106817-106904 CT GAC -recovered GeneMark_model.78235_t, terminal, 106817, 106904 -recovered GeneMark_model.78235_t, internal, 104082, 104166 -recovered GeneMark_model.78235_t, internal, 105406, 105500 -recovered GeneMark_model.78235_t, internal, 105530, 105586 -recovered GeneMark_model.78235_t, internal, 105889, 105927 -recovered GeneMark_model.78235_t, internal, 106041, 106061 -recovered GeneMark_model.78235_t, internal, 106180, 106236 -recovered GeneMark_model.78235_t, internal, 106278, 106511 -recovered GeneMark_model.78235_t, internal, 106628, 106786 Valid prediction for GeneMark_model.78244_t Valid prediction for GlimmerHMM_glimmerT_44841-T1 Valid prediction for GeneMark_model.78255_t Valid prediction for snap_scaffold_19-snap.690-T1 Valid prediction for pasa_asmbl_22110.p1 Valid prediction for GeneMark_model.78272_t Valid prediction for snap_scaffold_19-snap.712-T1 Valid prediction for GlimmerHMM_glimmerT_44848-T1 Valid prediction for GeneMark_model.78222_t Valid prediction for GeneMark_model.78249_t Valid prediction for GeneMark_model.78209_t Valid prediction for snap_scaffold_19-snap.677-T1 Valid prediction for snap_scaffold_19-snap.714-T1 Valid prediction for GeneMark_model.78220_t Valid prediction for GeneMark_model.78259_t Valid prediction for GeneMark_model.78207_t Valid prediction for GeneMark_model.78229_t Valid prediction for GlimmerHMM_glimmerT_44847-T1 Valid prediction for GeneMark_model.78203_t Valid prediction for snap_scaffold_19-snap.693-T1 Valid prediction for GlimmerHMM_glimmerT_44858-T1 Valid prediction for GeneMark_model.78261_t Valid prediction for snap_scaffold_19-snap.720-T1 Valid prediction for GlimmerHMM_glimmerT_44832-T1 Couldn't classify 146906, 147265 Sorry, prediction pasa_asmbl_22105.p1 fails validation. (ATG) GC 144021-144035 GT AAG (ATG) AG 144585-144689 GT AGG (ACA) AG 144905-144990 GT AGG (CAC) AG 145484-145669 GT ACG (GTG) AG 146002-146102 GT TGG (ATT) AG 146629-146813 GT AGG (GGT) AG 146906-147265 CA TCC -recovered pasa_asmbl_22105.p1, initial, 144021, 144035 -recovered pasa_asmbl_22105.p1, initial, 144585, 144689 -recovered pasa_asmbl_22105.p1, internal, 144585, 144689 -recovered pasa_asmbl_22105.p1, internal, 144905, 144990 -recovered pasa_asmbl_22105.p1, internal, 145484, 145669 -recovered pasa_asmbl_22105.p1, internal, 146002, 146102 -recovered pasa_asmbl_22105.p1, internal, 146629, 146813 Couldn't classify 94815, 94841 Sorry, prediction GeneMark_model.78234_t fails validation. (ATG) AG 92736-92744 GT GTG (ACA) AG 92766-92792 GT GTG (ATG) AG 92818-92826 GT GTG (ACA) AG 92850-92864 GT GTG (AGA) AG 92888-92908 GT CAG (AGA) AG 92930-93040 GT CAG (AGA) AG 93064-93090 GT GTG (AGA) AG 93114-93216 GT CTG (GGG) AG 93303-93313 GT GGG (GGA) AG 93334-93369 GT CAG (AGA) AG 94266-94348 GT GAG (TCT) AG 94504-94582 GT AGG (TGG) AG 94689-94748 GT AGG (AGG) AG 94769-94792 GT AGG (GTG) AG 94815-94841 GT GAG -recovered GeneMark_model.78234_t, initial, 92736, 92744 -recovered GeneMark_model.78234_t, initial, 92818, 92826 add_exon() Sorry, GeneMark_model.78234_t 94266-94348-terminal-2 is invalid. -recovered GeneMark_model.78234_t, terminal, 94266, 94348 -recovered GeneMark_model.78234_t, internal, 92736, 92744 -recovered GeneMark_model.78234_t, internal, 92766, 92792 -recovered GeneMark_model.78234_t, internal, 92818, 92826 -recovered GeneMark_model.78234_t, internal, 92850, 92864 -recovered GeneMark_model.78234_t, internal, 92888, 92908 -recovered GeneMark_model.78234_t, internal, 92930, 93040 -recovered GeneMark_model.78234_t, internal, 93064, 93090 -recovered GeneMark_model.78234_t, internal, 93114, 93216 -recovered GeneMark_model.78234_t, internal, 93303, 93313 -recovered GeneMark_model.78234_t, internal, 93334, 93369 -recovered GeneMark_model.78234_t, internal, 94266, 94348 -recovered GeneMark_model.78234_t, internal, 94504, 94582 -recovered GeneMark_model.78234_t, internal, 94689, 94748 -recovered GeneMark_model.78234_t, internal, 94769, 94792 -recovered GeneMark_model.78234_t, internal, 94815, 94841 Valid prediction for HiQ_model.g29923.t1 Valid prediction for snap_scaffold_19-snap.682-T1 Valid prediction for Augustus_model.g29915.t1 Valid prediction for GeneMark_model.78277_t Valid prediction for snap_scaffold_19-snap.700-T1 Valid prediction for GeneMark_model.78227_t Valid prediction for snap_scaffold_19-snap.717-T1 Valid prediction for snap_scaffold_19-snap.694-T1 Valid prediction for GlimmerHMM_glimmerT_44854-T1 Valid prediction for GeneMark_model.78246_t Valid prediction for HiQ_model.g29925.t1 Valid prediction for GeneMark_model.78236_t Valid prediction for GeneMark_model.78225_t Valid prediction for snap_scaffold_19-snap.699-T1 Valid prediction for snap_scaffold_19-snap.684-T1 Valid prediction for snap_scaffold_19-snap.673-T1 Valid prediction for GeneMark_model.78231_t Valid prediction for Augustus_model.g29924.t1 Valid prediction for GeneMark_model.78218_t Valid prediction for GlimmerHMM_glimmerT_44846-T1 Valid prediction for GeneMark_model.78242_t Valid prediction for snap_scaffold_19-snap.702-T1 Valid prediction for GeneMark_model.78251_t Valid prediction for CodingQuarry_transcript_25566-T1 Valid prediction for GlimmerHMM_glimmerT_44851-T1 Valid prediction for GeneMark_model.78254_t Valid prediction for snap_scaffold_19-snap.707-T1 Valid prediction for snap_scaffold_19-snap.718-T1 Valid prediction for GeneMark_model.78211_t Valid prediction for GeneMark_model.78239_t Valid prediction for GeneMark_model.78252_t Couldn't classify 49410, 49433 Sorry, prediction GeneMark_model.78217_t fails validation. (GGT) AG 49410-49433 GT GGG (TGG) AG 49472-49507 GT GGG (GGA) AG 49532-49597 GT ACG (GGG) AG 49621-49629 GT AAG (AAG) AG 49659-49739 GT AAG (GGA) AG 49770-49805 GC AGG (AGA) AG 49862-50017 GT CCG (AGG) AG 50050-50188 CT AAC -recovered GeneMark_model.78217_t, terminal, 50050, 50188 -recovered GeneMark_model.78217_t, internal, 49410, 49433 -recovered GeneMark_model.78217_t, internal, 49472, 49507 -recovered GeneMark_model.78217_t, internal, 49532, 49597 -recovered GeneMark_model.78217_t, internal, 49621, 49629 -recovered GeneMark_model.78217_t, internal, 49659, 49739 -recovered GeneMark_model.78217_t, internal, 49770, 49805 -recovered GeneMark_model.78217_t, internal, 49862, 50017 Valid prediction for snap_scaffold_19-snap.701-T1 Valid prediction for GeneMark_model.78257_t Valid prediction for GeneMark_model.78248_t Valid prediction for snap_scaffold_19-snap.705-T1 Valid prediction for GlimmerHMM_glimmerT_44836-T1 Couldn't classify 148762, 148884 Couldn't classify 154498, 154615 Sorry, prediction pasa_asmbl_22107.p1 fails validation. (GTC) TT 148762-148884 GT AGG (GCT) AG 149503-149640 GT CGG (ATC) AG 151886-151919 GT AGG (ACC) AG 153059-153277 GT AGG (GCC) AG 153780-154012 GT AGG (GAT) AG 154183-154268 GT AGG (GTT) AG 154498-154615 TC AGT -recovered pasa_asmbl_22107.p1, internal, 149503, 149640 -recovered pasa_asmbl_22107.p1, internal, 151886, 151919 -recovered pasa_asmbl_22107.p1, internal, 153059, 153277 -recovered pasa_asmbl_22107.p1, internal, 153780, 154012 -recovered pasa_asmbl_22107.p1, internal, 154183, 154268 Valid prediction for GeneMark_model.78243_t Valid prediction for GlimmerHMM_glimmerT_44843-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GeneMark_model.78275_t Couldn't classify 216549, 216705 Couldn't classify 220140, 220166 Sorry, prediction pasa_asmbl_22112.p1 fails validation. (CGG) TT 216549-216705 GT AGG (ATG) AG 217716-217784 GT AGG (GGA) AG 217876-218008 GT GGG (ACA) AG 218883-219064 GT AGG (ACA) AG 219327-219379 GT TGG (AAA) AG 220140-220166 CC CCC add_exon() Sorry, pasa_asmbl_22112.p1 217716-217784-initial-1 is invalid. -recovered pasa_asmbl_22112.p1, initial, 217716, 217784 -recovered pasa_asmbl_22112.p1, internal, 217716, 217784 -recovered pasa_asmbl_22112.p1, internal, 217876, 218008 -recovered pasa_asmbl_22112.p1, internal, 218883, 219064 -recovered pasa_asmbl_22112.p1, internal, 219327, 219379 Valid prediction for GeneMark_model.78216_t Valid prediction for snap_scaffold_19-snap.716-T1 Valid prediction for snap_scaffold_19-snap.695-T1 Valid prediction for snap_scaffold_19-snap.697-T1 Valid prediction for snap_scaffold_19-snap.691-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GeneMark_model.78241_t Valid prediction for Augustus_model.g29931.t1 Valid prediction for GeneMark_model.78264_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.688-T1 Couldn't classify 38272, 38383 Couldn't classify 39060, 39215 Sorry, prediction pasa_asmbl_21912.p1 fails validation. (TTA) GA 38272-38383 GT AGG (GAG) AG 38595-38773 GT TCG (GCC) AG 39060-39215 GC TGG -recovered pasa_asmbl_21912.p1, internal, 38595, 38773 -recovered pasa_asmbl_21912.p1, internal, 39060, 39215 Couldn't classify 212218, 212384 Couldn't classify 212785, 212929 Sorry, prediction pasa_asmbl_21900.p1 fails validation. (GAG) AG 212218-212384 GT AGG (ACC) AG 212785-212929 GG CTG -recovered pasa_asmbl_21900.p1, internal, 212218, 212384 Valid prediction for GeneMark_model.78278_t Valid prediction for Augustus_model.g29921.t1 Valid prediction for Augustus_model.g29928.t1 Valid prediction for GeneMark_model.78214_t Valid prediction for GeneMark_model.78268_t Valid prediction for snap_scaffold_19-snap.674-T1 Valid prediction for GlimmerHMM_glimmerT_44842-T1 Valid prediction for GeneMark_model.78237_t Valid prediction for GeneMark_model.78276_t Valid prediction for GeneMark_model.78215_t Valid prediction for snap_scaffold_19-snap.715-T1 Valid prediction for GeneMark_model.78238_t Valid prediction for GeneMark_model.78258_t Valid prediction for pasa_asmbl_21297.p1 Valid prediction for GlimmerHMM_glimmerT_44835-T1 Valid prediction for GlimmerHMM_glimmerT_44840-T1 Valid prediction for GeneMark_model.78230_t Valid prediction for snap_scaffold_19-snap.709-T1 Valid prediction for HiQ_model.g29922.t1 Valid prediction for GlimmerHMM_glimmerT_44857-T1 Valid prediction for GlimmerHMM_glimmerT_44838-T1 Valid prediction for Augustus_model.g29932.t1 Valid prediction for GeneMark_model.78212_t Valid prediction for GeneMark_model.78219_t Valid prediction for Augustus_model.g29917.t1 Valid prediction for GeneMark_model.78205_t Valid prediction for GlimmerHMM_glimmerT_44837-T1 Valid prediction for GeneMark_model.78204_t Valid prediction for snap_scaffold_19-snap.704-T1 Valid prediction for GeneMark_model.78240_t Valid prediction for snap_scaffold_19-snap.680-T1 Valid prediction for Augustus_model.g29920.t1 Valid prediction for Augustus_model.g29918.t1 Valid prediction for GlimmerHMM_glimmerT_44831-T1 Valid prediction for Augustus_model.g29926.t1 Valid prediction for GeneMark_model.78266_t Valid prediction for snap_scaffold_19-snap.678-T1 Valid prediction for snap_scaffold_19-snap.696-T1 Valid prediction for snap_scaffold_19-snap.685-T1 Valid prediction for snap_scaffold_19-snap.692-T1 Valid prediction for snap_scaffold_19-snap.710-T1 Valid prediction for Augustus_model.g29919.t1 Valid prediction for GlimmerHMM_glimmerT_44853-T1 Valid prediction for GeneMark_model.78271_t Valid prediction for GlimmerHMM_glimmerT_44844-T1 Valid prediction for Augustus_model.g29929.t1 Valid prediction for GlimmerHMM_glimmerT_44845-T1 Valid prediction for snap_scaffold_19-snap.676-T1 Valid prediction for GlimmerHMM_glimmerT_44830-T1 Valid prediction for GlimmerHMM_glimmerT_44856-T1 Valid prediction for Augustus_model.g29930.t1 Valid prediction for snap_scaffold_19-snap.683-T1 Valid prediction for snap_scaffold_19-snap.708-T1 Couldn't classify 30256, 30479 Sorry, prediction pasa_asmbl_21307.p1 fails validation. (ATG) CC 25985-26177 GT AGG (GTT) AG 27041-27200 GT GAG (GCG) AG 28800-28990 GT AGG (TGG) AG 29439-29535 GT AGG (GTA) AG 29678-29814 GT GGG (GTG) AG 30256-30479 AA CCA -recovered pasa_asmbl_21307.p1, initial, 25985, 26177 -recovered pasa_asmbl_21307.p1, internal, 27041, 27200 -recovered pasa_asmbl_21307.p1, internal, 28800, 28990 -recovered pasa_asmbl_21307.p1, internal, 29439, 29535 -recovered pasa_asmbl_21307.p1, internal, 29678, 29814 Valid prediction for GlimmerHMM_glimmerT_44852-T1 Valid prediction for GeneMark_model.78273_t Valid prediction for GeneMark_model.78253_t Valid prediction for GlimmerHMM_glimmerT_44849-T1 Valid prediction for GeneMark_model.78224_t Valid prediction for snap_scaffold_19-snap.689-T1 Valid prediction for GeneMark_model.78208_t Valid prediction for GeneMark_model.78210_t Valid prediction for snap_scaffold_19-snap.703-T1 Valid prediction for Augustus_model.g29916.t1 Valid prediction for CodingQuarry_transcript_25565-T1 Valid prediction for HiQ_model.g29927.t1 Valid prediction for GeneMark_model.78223_t Valid prediction for GlimmerHMM_glimmerT_44833-T1 Valid prediction for GeneMark_model.78256_t Valid prediction for GeneMark_model.78263_t Valid prediction for snap_scaffold_19-snap.713-T1 Valid prediction for snap_scaffold_19-snap.706-T1 Valid prediction for GlimmerHMM_glimmerT_44855-T1 Couldn't classify 173071, 173140 Couldn't classify 177285, 177823 Sorry, prediction pasa_asmbl_21950.p1 fails validation. (GAC) AG 173071-173140 GT CGG (GTG) AG 175009-175545 GT TGG (AAC) AG 177285-177823 AG AGA -recovered pasa_asmbl_21950.p1, internal, 173071, 173140 -recovered pasa_asmbl_21950.p1, internal, 175009, 175545 Valid prediction for GeneMark_model.78232_t Couldn't classify 39743, 39914 Sorry, prediction pasa_asmbl_21303.p1 fails validation. (GTG) AC 39743-39914 GT GGG (GAG) AG 40282-40363 GT TTG (TTG) AG 40677-40835 GT AGG (CAC) AG 40942-41101 GT AGG (GGC) AG 41479-41718 GT GAG -recovered pasa_asmbl_21303.p1, terminal, 41479, 41718 -recovered pasa_asmbl_21303.p1, internal, 40282, 40363 -recovered pasa_asmbl_21303.p1, internal, 40677, 40835 -recovered pasa_asmbl_21303.p1, internal, 40942, 41101 -recovered pasa_asmbl_21303.p1, internal, 41479, 41718 Valid prediction for GeneMark_model.78228_t Valid prediction for snap_scaffold_19-snap.687-T1 Valid prediction for GeneMark_model.78262_t Valid prediction for GeneMark_model.78274_t Valid prediction for GlimmerHMM_glimmerT_44850-T1 Couldn't classify 168834, 169706 Sorry, prediction pasa_asmbl_21291.p1 fails validation. (TCT) AC 168834-169706 CC AGC Valid prediction for GeneMark_model.78260_t Valid prediction for GlimmerHMM_glimmerT_44834-T1 Valid prediction for CodingQuarry_transcript_25564-T1 Valid prediction for snap_scaffold_19-snap.681-T1 Couldn't classify 30546, 30938 Sorry, prediction pasa_asmbl_21305.p1 fails validation. (CGC) AC 30546-30938 GC GAG Valid prediction for snap_scaffold_19-snap.711-T1 Valid prediction for GeneMark_model.78247_t Valid prediction for snap_scaffold_19-snap.698-T1 Valid prediction for snap_scaffold_19-snap.719-T1 Valid prediction for GeneMark_model.78226_t Valid prediction for GeneMark_model.78245_t Valid prediction for GlimmerHMM_glimmerT_44839-T1 Couldn't classify 169806, 170441 Couldn't classify 172898, 172972 Sorry, prediction pasa_asmbl_21290.p1 fails validation. (ACC) GC 169806-170441 GT AGG (ATG) AG 172259-172315 GT AGG (CGT) AG 172898-172972 GA TGG -recovered pasa_asmbl_21290.p1, initial, 172259, 172315 -recovered pasa_asmbl_21290.p1, internal, 172259, 172315 Valid prediction for GeneMark_model.78206_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11404, rend_intergenic: 4658 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24461, rend_intergenic: 16705 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54298, rend_intergenic: 24859 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 62097, rend_intergenic: 55721 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70937, rend_intergenic: 62722 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109396, rend_intergenic: 73414 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111152, rend_intergenic: 110016 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113499, rend_intergenic: 112169 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115320, rend_intergenic: 115215 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 120769, rend_intergenic: 117542 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155168, rend_intergenic: 152631 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157210, rend_intergenic: 156692 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199791, rend_intergenic: 197665 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 235028, rend_intergenic: 232832 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 250144, rend_intergenic: 246479 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 267574, rend_intergenic: 265055 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 271946, rend_intergenic: 270540 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 272166, rend_intergenic: 272004 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 278717, rend_intergenic: 272191 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 291983, rend_intergenic: 284801 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 293558 -exon list size: 1002 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 41 predictions from path traversal Error with prediction: snap lend_intergenic: 11404, rend_intergenic: 4658 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24461, rend_intergenic: 16705 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54298, rend_intergenic: 24859 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 62097, rend_intergenic: 55721 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70937, rend_intergenic: 62722 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109396, rend_intergenic: 73414 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111152, rend_intergenic: 110016 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113499, rend_intergenic: 112169 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115320, rend_intergenic: 115215 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 120769, rend_intergenic: 117542 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155168, rend_intergenic: 152631 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157210, rend_intergenic: 156692 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199791, rend_intergenic: 197665 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 235028, rend_intergenic: 232832 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 250144, rend_intergenic: 246479 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 267574, rend_intergenic: 265055 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 271946, rend_intergenic: 270540 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 272166, rend_intergenic: 272004 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 278717, rend_intergenic: 272191 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 291983, rend_intergenic: 284801 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 19 predictions persist after filtering for low support