-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_2867356-3050083

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_25554-T1
Couldn't classify 165415, 165489
Couldn't classify 167645, 167877
Sorry, prediction pasa_asmbl_22100.p1 fails validation.
(TCC)	 AG	165415-165489	GT	AGG
(ATT)	 AG	165597-165713	GT	CGG
(ACC)	 AG	166066-166168	GT	CTG
(TGG)	 AG	166623-166822	GT	TGG
(ATG)	 AG	167254-167338	GT	CTG
(ACC)	 AG	167645-167877	GC	TTG
-recovered pasa_asmbl_22100.p1, initial, 167254, 167338
-recovered pasa_asmbl_22100.p1, internal, 165415, 165489
-recovered pasa_asmbl_22100.p1, internal, 165597, 165713
-recovered pasa_asmbl_22100.p1, internal, 166066, 166168
-recovered pasa_asmbl_22100.p1, internal, 166623, 166822
-recovered pasa_asmbl_22100.p1, internal, 167254, 167338
-recovered pasa_asmbl_22100.p1, internal, 167645, 167877
Valid prediction for snap_scaffold_19-snap.667-T1
Valid prediction for snap_scaffold_19-snap.671-T1
Valid prediction for Augustus_model.g29910.t1
Valid prediction for snap_scaffold_19-snap.637-T1
Valid prediction for snap_scaffold_19-snap.656-T1
Valid prediction for snap_scaffold_19-snap.663-T1
Valid prediction for GlimmerHMM_glimmerT_44818-T1
Valid prediction for GeneMark_model.78180_t
Couldn't classify 119050, 119124
Sorry, prediction pasa_asmbl_22098.p1 fails validation.
(CGC)	 TG	119050-119124	GT	AGG
(GGC)	 AG	119366-119521	GT	AGG
(AGT)	 AG	119691-119810	CC	GAC
-recovered pasa_asmbl_22098.p1, terminal, 119691, 119810
-recovered pasa_asmbl_22098.p1, internal, 119366, 119521
Valid prediction for snap_scaffold_19-snap.658-T1
Valid prediction for GeneMark_model.78190_t
Valid prediction for HiQ_model.g29904.t1
Valid prediction for CodingQuarry_transcript_25557-T1
Valid prediction for Augustus_model.g29915.t1
Valid prediction for GeneMark_model.78203_t
Valid prediction for Augustus_model.g29908.t1
Couldn't classify 71057, 71279
Sorry, prediction pasa_asmbl_22094.p1 fails validation.
(CGT)	 AG	71057-71279	GT	TGG
(ATG)	 AG	71541-71689	GT	TGG
(GCT)	 AG	71940-72914	AG	AGA
-recovered pasa_asmbl_22094.p1, initial, 71541, 71689
-recovered pasa_asmbl_22094.p1, terminal, 71940, 72914
-recovered pasa_asmbl_22094.p1, internal, 71057, 71279
-recovered pasa_asmbl_22094.p1, internal, 71541, 71689
Valid prediction for HiQ_model.g29905.t1
Valid prediction for GeneMark_model.78176_t
Valid prediction for pasa_asmbl_22092.p1
Valid prediction for GlimmerHMM_glimmerT_44826-T1
Valid prediction for GeneMark_model.78196_t
Valid prediction for snap_scaffold_19-snap.655-T1
Valid prediction for snap_scaffold_19-snap.633-T1
Valid prediction for GeneMark_model.78191_t
Valid prediction for GlimmerHMM_glimmerT_44822-T1
Valid prediction for GeneMark_model.78178_t
Valid prediction for snap_scaffold_19-snap.661-T1
Valid prediction for snap_scaffold_19-snap.646-T1
Valid prediction for snap_scaffold_19-snap.642-T1
Valid prediction for CodingQuarry_transcript_25561-T1
Valid prediction for HiQ_model.g29900.t1
Valid prediction for snap_scaffold_19-snap.640-T1
Couldn't classify 23030, 23116
Couldn't classify 23804, 24111
Sorry, prediction pasa_asmbl_22090.p1 fails validation.
(GAT)	 AG	23030-23116	GT	AGG
(GTG)	 AG	23414-23594	GT	AGG
(GTG)	 AG	23804-24111	GG	AGG
-recovered pasa_asmbl_22090.p1, internal, 23030, 23116
-recovered pasa_asmbl_22090.p1, internal, 23414, 23594
Couldn't classify 113513, 113637
Couldn't classify 114458, 114545
Sorry, prediction pasa_asmbl_22736.p1 fails validation.
(TTG)	 CA	113513-113637	GT	AGG
(GGA)	 AG	113775-113918	GT	CGG
(GGT)	 AG	114458-114545	GG	TTG
-recovered pasa_asmbl_22736.p1, internal, 113775, 113918
Valid prediction for GlimmerHMM_glimmerT_44814-T1
Valid prediction for CodingQuarry_transcript_25559-T1
Valid prediction for snap_scaffold_19-snap.668-T1
Valid prediction for Augustus_model.g29898.t1
Couldn't classify 24175, 24382
Couldn't classify 24500, 24588
Sorry, prediction pasa_asmbl_22725.p1 fails validation.
(GAG)	 CG	24175-24382	GT	AGG
(GTT)	 AG	24500-24588	CA	CCC
Valid prediction for GeneMark_model.78194_t
Valid prediction for GlimmerHMM_glimmerT_44811-T1
Valid prediction for snap_scaffold_19-snap.647-T1
Valid prediction for GlimmerHMM_glimmerT_44817-T1
Valid prediction for Augustus_model.g29913.t1
Valid prediction for GlimmerHMM_glimmerT_44821-T1
Valid prediction for snap_scaffold_19-snap.664-T1
Valid prediction for snap_scaffold_19-snap.660-T1
Valid prediction for GeneMark_model.78174_t
Valid prediction for GeneMark_model.78183_t
Valid prediction for snap_scaffold_19-snap.665-T1
Valid prediction for GeneMark_model.78182_t
Valid prediction for snap_scaffold_19-snap.639-T1
Valid prediction for snap_scaffold_19-snap.669-T1
Valid prediction for snap_scaffold_19-snap.670-T1
Valid prediction for pasa_asmbl_22095.p1
Valid prediction for GeneMark_model.78200_t
Valid prediction for GeneMark_model.78192_t
Valid prediction for snap_scaffold_19-snap.634-T1
Valid prediction for GlimmerHMM_glimmerT_44827-T1
Valid prediction for snap_scaffold_19-snap.657-T1
Valid prediction for GeneMark_model.78185_t
Valid prediction for GeneMark_model.78170_t
Valid prediction for GeneMark_model.78201_t
Valid prediction for Augustus_model.g29906.t1
Valid prediction for GlimmerHMM_glimmerT_44815-T1
Valid prediction for Augustus_model.g29909.t1
Valid prediction for GeneMark_model.78181_t
Valid prediction for snap_scaffold_19-snap.650-T1
Valid prediction for snap_scaffold_19-snap.631-T1
Valid prediction for GlimmerHMM_glimmerT_44810-T1
Valid prediction for GeneMark_model.78187_t
Valid prediction for snap_scaffold_19-snap.651-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_44808-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.662-T1
Valid prediction for GeneMark_model.78184_t
Valid prediction for GeneMark_model.78172_t
Valid prediction for Augustus_model.g29902.t1
Valid prediction for GlimmerHMM_glimmerT_44816-T1
Valid prediction for snap_scaffold_19-snap.644-T1
Valid prediction for snap_scaffold_19-snap.636-T1
Valid prediction for snap_scaffold_19-snap.648-T1
Valid prediction for GeneMark_model.78177_t
Couldn't classify 46133, 46232
Couldn't classify 56442, 56629
Sorry, prediction pasa_asmbl_21286.p1 fails validation.
(CTG)	 GT	46133-46232	GT	ACG
(TCG)	 AG	46550-46726	GT	GGG
(ATC)	 AG	46815-46940	GT	AGG
(CTC)	 AG	47114-47203	GT	AGG
(GTT)	 AG	47525-47719	GT	AGG
(AGG)	 AG	48769-49047	GT	CAG
(AGC)	 AG	49434-49697	GT	AAG
(CTC)	 AG	49783-49877	GT	AGG
(CTG)	 AG	49978-50146	GT	GCG
(CTC)	 AG	50348-50434	GT	AGG
(ACT)	 AG	50663-50854	GT	AGG
(CCG)	 AG	52938-53129	GT	GAG
(ACC)	 AG	53265-53354	GT	CAG
(CTC)	 AG	53584-53850	GT	CAG
(TCT)	 AG	54191-54307	GT	AGG
(GTG)	 AG	54561-54725	GT	CGG
(AGG)	 AG	55067-55222	GT	CGG
(AAC)	 AG	55393-55509	GT	AGG
(CCA)	 AG	55676-55945	GT	AGG
(CCA)	 AG	56442-56629	GT	TGG
-recovered pasa_asmbl_21286.p1, internal, 46550, 46726
-recovered pasa_asmbl_21286.p1, internal, 46815, 46940
-recovered pasa_asmbl_21286.p1, internal, 47114, 47203
-recovered pasa_asmbl_21286.p1, internal, 47525, 47719
-recovered pasa_asmbl_21286.p1, internal, 48769, 49047
-recovered pasa_asmbl_21286.p1, internal, 49434, 49697
-recovered pasa_asmbl_21286.p1, internal, 49783, 49877
-recovered pasa_asmbl_21286.p1, internal, 49978, 50146
-recovered pasa_asmbl_21286.p1, internal, 50348, 50434
-recovered pasa_asmbl_21286.p1, internal, 50663, 50854
-recovered pasa_asmbl_21286.p1, internal, 52938, 53129
-recovered pasa_asmbl_21286.p1, internal, 53265, 53354
-recovered pasa_asmbl_21286.p1, internal, 53584, 53850
-recovered pasa_asmbl_21286.p1, internal, 54191, 54307
-recovered pasa_asmbl_21286.p1, internal, 54561, 54725
-recovered pasa_asmbl_21286.p1, internal, 55067, 55222
-recovered pasa_asmbl_21286.p1, internal, 55393, 55509
-recovered pasa_asmbl_21286.p1, internal, 55676, 55945
-recovered pasa_asmbl_21286.p1, internal, 56442, 56629
Valid prediction for snap_scaffold_19-snap.643-T1
Valid prediction for CodingQuarry_transcript_25562-T1
Valid prediction for GeneMark_model.78175_t
Valid prediction for GlimmerHMM_glimmerT_44828-T1
Valid prediction for GlimmerHMM_glimmerT_44812-T1
Valid prediction for GeneMark_model.78193_t
Valid prediction for snap_scaffold_19-snap.632-T1
Valid prediction for CodingQuarry_transcript_25556-T1
Valid prediction for GlimmerHMM_glimmerT_44824-T1
Valid prediction for CodingQuarry_transcript_25560-T1
Valid prediction for GeneMark_model.78202_t
Valid prediction for Augustus_model.g29912.t1
Valid prediction for GeneMark_model.78168_t
Valid prediction for snap_scaffold_19-snap.652-T1
Couldn't classify 57717, 57792
Couldn't classify 60817, 60822
Sorry, prediction pasa_asmbl_21285.p1 fails validation.
(TAC)	 TG	57717-57792	GT	TGG
(GTC)	 AG	57979-58068	GT	TCG
(AAC)	 AG	58621-59042	GT	AGG
(ATG)	 AG	59208-59346	GT	CCG
(TGC)	 AG	59434-59595	GT	TAG
(AGT)	 AG	59857-59982	GT	ACG
(ATG)	 AG	60241-60347	GT	AGG
(GGC)	 AG	60817-60822	CC	GGC
-recovered pasa_asmbl_21285.p1, initial, 59208, 59346
add_exon() Sorry, pasa_asmbl_21285.p1 60241-60347-initial-1 is invalid.
-recovered pasa_asmbl_21285.p1, initial, 60241, 60347
-recovered pasa_asmbl_21285.p1, internal, 57979, 58068
-recovered pasa_asmbl_21285.p1, internal, 58621, 59042
-recovered pasa_asmbl_21285.p1, internal, 59208, 59346
-recovered pasa_asmbl_21285.p1, internal, 59434, 59595
-recovered pasa_asmbl_21285.p1, internal, 59857, 59982
-recovered pasa_asmbl_21285.p1, internal, 60241, 60347
Valid prediction for pasa_asmbl_21276.p1
Valid prediction for GeneMark_model.78197_t
Valid prediction for GlimmerHMM_glimmerT_44819-T1
Valid prediction for Augustus_model.g29907.t1
Valid prediction for GlimmerHMM_glimmerT_44825-T1
Valid prediction for GeneMark_model.78199_t
Valid prediction for CodingQuarry_transcript_25558-T1
Valid prediction for GeneMark_model.78169_t
Valid prediction for snap_scaffold_19-snap.653-T1
Valid prediction for HiQ_model.g29897.t1
Valid prediction for snap_scaffold_19-snap.659-T1
Valid prediction for pasa_asmbl_21288.p1
Couldn't classify 44634, 44725
Sorry, prediction pasa_asmbl_21287.p1 fails validation.
(ATG)	 AA	37791-37938	GT	AGG
(TTG)	 AG	38142-38267	GT	AGG
(TGG)	 AG	38477-38614	GT	AAG
(ACC)	 AG	38693-38824	GT	TGG
(CTG)	 AG	39194-39331	GT	AAG
(ACC)	 AG	39464-39646	GT	GGG
(GAA)	 AG	39804-39995	GT	GGG
(AGG)	 AG	40233-40415	GT	AGG
(CCA)	 AG	40710-40886	GT	TGG
(CCC)	 AG	41813-41968	GT	AGG
(ACC)	 AG	42363-42491	GT	TGG
(ACC)	 AG	42799-42942	GT	AGG
(GAG)	 AG	44634-44725	AT	ACA
-recovered pasa_asmbl_21287.p1, initial, 37791, 37938
-recovered pasa_asmbl_21287.p1, internal, 38142, 38267
-recovered pasa_asmbl_21287.p1, internal, 38477, 38614
-recovered pasa_asmbl_21287.p1, internal, 38693, 38824
-recovered pasa_asmbl_21287.p1, internal, 39194, 39331
-recovered pasa_asmbl_21287.p1, internal, 39464, 39646
-recovered pasa_asmbl_21287.p1, internal, 39804, 39995
-recovered pasa_asmbl_21287.p1, internal, 40233, 40415
-recovered pasa_asmbl_21287.p1, internal, 40710, 40886
-recovered pasa_asmbl_21287.p1, internal, 41813, 41968
-recovered pasa_asmbl_21287.p1, internal, 42363, 42491
-recovered pasa_asmbl_21287.p1, internal, 42799, 42942
Valid prediction for GlimmerHMM_glimmerT_44809-T1
Valid prediction for HiQ_model.g29914.t1
Valid prediction for snap_scaffold_19-snap.641-T1
Valid prediction for GlimmerHMM_glimmerT_44820-T1
Valid prediction for HiQ_model.g29911.t1
Valid prediction for GeneMark_model.78173_t
Valid prediction for Augustus_model.g29901.t1
Valid prediction for GlimmerHMM_glimmerT_44813-T1
Valid prediction for snap_scaffold_19-snap.666-T1
Valid prediction for GlimmerHMM_glimmerT_44807-T1
Valid prediction for GeneMark_model.78189_t
Valid prediction for GeneMark_model.78198_t
Valid prediction for snap_scaffold_19-snap.649-T1
Valid prediction for Augustus_model.g29899.t1
Valid prediction for snap_scaffold_19-snap.672-T1
Valid prediction for Augustus_model.g29903.t1
Valid prediction for GeneMark_model.78186_t
Valid prediction for snap_scaffold_19-snap.654-T1
Valid prediction for snap_scaffold_19-snap.638-T1
Valid prediction for pasa_asmbl_21280.p1
Valid prediction for GeneMark_model.78179_t
Couldn't classify 91751, 91870
Sorry, prediction pasa_asmbl_21281.p1 fails validation.
(GAG)	 GA	91751-91870	GT	GGG
(GAG)	 AG	91942-92007	GT	AGG
(CAT)	 AG	92144-92203	GT	AGG
(CAA)	 AG	92789-92942	GT	AGG
(GCC)	 AG	93193-93377	AC	AAA
-recovered pasa_asmbl_21281.p1, terminal, 93193, 93377
-recovered pasa_asmbl_21281.p1, internal, 91942, 92007
-recovered pasa_asmbl_21281.p1, internal, 92144, 92203
-recovered pasa_asmbl_21281.p1, internal, 92789, 92942
Valid prediction for GeneMark_model.78195_t
Valid prediction for snap_scaffold_19-snap.645-T1
Valid prediction for GlimmerHMM_glimmerT_44823-T1
Valid prediction for snap_scaffold_19-snap.635-T1
Sorry, intron length (8) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12315, rend_intergenic: 8031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27638, rend_intergenic: 15126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38887, rend_intergenic: 36650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47274, rend_intergenic: 39590  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50407, rend_intergenic: 49752  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55165, rend_intergenic: 52308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79117, rend_intergenic: 74704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88464, rend_intergenic: 82650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130786, rend_intergenic: 121600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144938, rend_intergenic: 134224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155097, rend_intergenic: 147071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180064, rend_intergenic: 176401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 182728
-exon list size: 619


building trellis

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51.9    
52.0    
52.2    
52.3    
52.5    
52.7    
52.8    
53.0    
53.1    
53.3    
53.5    
53.6    
53.8    
53.9    
54.1    
54.3    
54.4    
54.6    
54.8    
54.9    
55.1    
55.2    
55.4    
55.6    
55.7    
55.9    
56.0    
56.2    
56.4    
56.5    
56.7    
56.8    
57.0    
57.2    
57.3    
57.5    
57.6    
57.8    
58.0    
58.1    
58.3    
58.5    
58.6    
58.8    
58.9    
59.1    
59.3    
59.4    
59.6    
59.7    
59.9    
60.1    
60.2    
60.4    
60.5    
60.7    
60.9    
61.0    
61.2    
61.4    
61.5    
61.7    
61.8    
62.0    
62.2    
62.3    
62.5    
62.6    
62.8    
63.0    
63.1    
63.3    
63.4    
63.6    
63.8    
63.9    
64.1    
64.3    
64.4    
64.6    
64.7    
64.9    
65.1    
65.2    
65.4    
65.5    
65.7    
65.9    
66.0    
66.2    
66.3    
66.5    
66.7    
66.8    
67.0    
67.1    
67.3    
67.5    
67.6    
67.8    
68.0    
68.1    
68.3    
68.4    
68.6    
68.8    
68.9    
69.1    
69.2    
69.4    
69.6    
69.7    
69.9    
70.0    
70.2    
70.4    
70.5    
70.7    
70.9    
71.0    
71.2    
71.3    
71.5    
71.7    
71.8    
72.0    
72.1    
72.3    
72.5    
72.6    
72.8    
72.9    
73.1    
73.3    
73.4    
73.6    
73.8    
73.9    
74.1    
74.2    
74.4    
74.6    
74.7    
74.9    
75.0    
75.2    
75.4    
75.5    
75.7    
75.8    
76.0    
76.2    
76.3    
76.5    
76.7    
76.8    
77.0    
77.1    
77.3    
77.5    
77.6    
77.8    
77.9    
78.1    
78.3    
78.4    
78.6    
78.7    
78.9    
79.1    
79.2    
79.4    
79.5    
79.7    
79.9    
80.0    
80.2    
80.4    
80.5    
80.7    
80.8    
81.0    
81.2    
81.3    
81.5    
81.6    
81.8    
82.0    
82.1    
82.3    
82.4    
82.6    
82.8    
82.9    
83.1    
83.3    
83.4    
83.6    
83.7    
83.9    
84.1    
84.2    
84.4    
84.5    
84.7    
84.9    
85.0    
85.2    
85.3    
85.5    
85.7    
85.8    
86.0    
86.2    
86.3    
86.5    
86.6    
86.8    
87.0    
87.1    
87.3    
87.4    
87.6    
87.8    
87.9    
88.1    
88.2    
88.4    
88.6    
88.7    
88.9    
89.0    
89.2    
89.4    
89.5    
89.7    
89.9    
90.0    
90.2    
90.3    
90.5    
90.7    
90.8    
91.0    
91.1    
91.3    
91.5    
91.6    
91.8    
91.9    
92.1    
92.3    
92.4    
92.6    
92.8    
92.9    
93.1    
93.2    
93.4    
93.6    
93.7    
93.9    
94.0    
94.2    
94.4    
94.5    
94.7    
94.8    
95.0    
95.2    
95.3    
95.5    
95.7    
95.8    
96.0    
96.1    
96.3    
96.5    
96.6    
96.8    
96.9    
97.1    
97.3    
97.4    
97.6    
97.7    
97.9    
98.1    
98.2    
98.4    
98.6    
98.7    
98.9    
99.0    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 12315, rend_intergenic: 8031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27638, rend_intergenic: 15126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38887, rend_intergenic: 36650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47274, rend_intergenic: 39590  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50407, rend_intergenic: 49752  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55165, rend_intergenic: 52308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79117, rend_intergenic: 74704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88464, rend_intergenic: 82650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130786, rend_intergenic: 121600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144938, rend_intergenic: 134224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155097, rend_intergenic: 147071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180064, rend_intergenic: 176401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support