-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_1828685-2057110

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g29830.t1
Valid prediction for GeneMark_model.77848_t
Valid prediction for GeneMark_model.77845_t
Valid prediction for snap_scaffold_19-snap.407-T1
Valid prediction for GeneMark_model.77869_t
Valid prediction for GlimmerHMM_glimmerT_44682-T1
Valid prediction for snap_scaffold_19-snap.415-T1
Valid prediction for GlimmerHMM_glimmerT_44683-T1
Valid prediction for GlimmerHMM_glimmerT_44680-T1
Valid prediction for snap_scaffold_19-snap.433-T1
Valid prediction for snap_scaffold_19-snap.410-T1
Valid prediction for snap_scaffold_19-snap.420-T1
Valid prediction for snap_scaffold_19-snap.398-T1
Valid prediction for GeneMark_model.77855_t
Valid prediction for GeneMark_model.77865_t
Valid prediction for GeneMark_model.77881_t
Valid prediction for snap_scaffold_19-snap.423-T1
Valid prediction for snap_scaffold_19-snap.418-T1
Valid prediction for snap_scaffold_19-snap.430-T1
Valid prediction for snap_scaffold_19-snap.421-T1
Valid prediction for Augustus_model.g29832.t1
Valid prediction for Augustus_model.g29825.t1
Valid prediction for GeneMark_model.77866_t
Valid prediction for GeneMark_model.77849_t
Valid prediction for snap_scaffold_19-snap.434-T1
Valid prediction for GlimmerHMM_glimmerT_44700-T1
Valid prediction for GlimmerHMM_glimmerT_44689-T1
Valid prediction for GeneMark_model.77884_t
Valid prediction for GeneMark_model.77864_t
Valid prediction for snap_scaffold_19-snap.406-T1
Valid prediction for GeneMark_model.77886_t
Valid prediction for snap_scaffold_19-snap.419-T1
Valid prediction for GeneMark_model.77882_t
Valid prediction for snap_scaffold_19-snap.413-T1
Valid prediction for GlimmerHMM_glimmerT_44692-T1
Valid prediction for snap_scaffold_19-snap.416-T1
Valid prediction for snap_scaffold_19-snap.424-T1
Valid prediction for GlimmerHMM_glimmerT_44679-T1
Valid prediction for snap_scaffold_19-snap.401-T1
Valid prediction for snap_scaffold_19-snap.409-T1
Valid prediction for Augustus_model.g29827.t1
Valid prediction for GeneMark_model.77856_t
Valid prediction for snap_scaffold_19-snap.431-T1
Valid prediction for GeneMark_model.77876_t
Valid prediction for snap_scaffold_19-snap.402-T1
Valid prediction for GlimmerHMM_glimmerT_44688-T1
Valid prediction for GlimmerHMM_glimmerT_44703-T1
Valid prediction for GeneMark_model.77887_t
Valid prediction for GeneMark_model.77878_t
Valid prediction for GlimmerHMM_glimmerT_44690-T1
Valid prediction for GlimmerHMM_glimmerT_44699-T1
Valid prediction for GlimmerHMM_glimmerT_44694-T1
Valid prediction for Augustus_model.g29829.t1
Valid prediction for GlimmerHMM_glimmerT_44691-T1
Valid prediction for snap_scaffold_19-snap.417-T1
Valid prediction for GeneMark_model.77846_t
Valid prediction for snap_scaffold_19-snap.426-T1
Valid prediction for snap_scaffold_19-snap.428-T1
Valid prediction for GeneMark_model.77874_t
Valid prediction for GlimmerHMM_glimmerT_44697-T1
Valid prediction for GeneMark_model.77853_t
Valid prediction for GeneMark_model.77842_t
Valid prediction for GlimmerHMM_glimmerT_44685-T1
Valid prediction for GeneMark_model.77879_t
Valid prediction for GeneMark_model.77851_t
Valid prediction for GeneMark_model.77871_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g29828.t1
Valid prediction for GeneMark_model.77891_t
Valid prediction for GlimmerHMM_glimmerT_44695-T1
Valid prediction for Augustus_model.g29833.t1
Valid prediction for GlimmerHMM_glimmerT_44693-T1
Valid prediction for snap_scaffold_19-snap.399-T1
Valid prediction for snap_scaffold_19-snap.412-T1
Valid prediction for snap_scaffold_19-snap.422-T1
Valid prediction for GeneMark_model.77847_t
Valid prediction for GlimmerHMM_glimmerT_44687-T1
Valid prediction for Augustus_model.g29826.t1
Valid prediction for snap_scaffold_19-snap.400-T1
Valid prediction for GeneMark_model.77857_t
Valid prediction for GeneMark_model.77858_t
Valid prediction for GlimmerHMM_glimmerT_44681-T1
Valid prediction for GlimmerHMM_glimmerT_44678-T1
Valid prediction for GeneMark_model.77867_t
Valid prediction for GeneMark_model.77844_t
Valid prediction for snap_scaffold_19-snap.408-T1
Valid prediction for GlimmerHMM_glimmerT_44684-T1
Valid prediction for snap_scaffold_19-snap.404-T1
Valid prediction for GeneMark_model.77843_t
Valid prediction for GeneMark_model.77860_t
Valid prediction for GeneMark_model.77888_t
Valid prediction for snap_scaffold_19-snap.432-T1
Valid prediction for GlimmerHMM_glimmerT_44696-T1
Valid prediction for GeneMark_model.77877_t
Valid prediction for snap_scaffold_19-snap.435-T1
Valid prediction for snap_scaffold_19-snap.427-T1
Valid prediction for GeneMark_model.77870_t
Valid prediction for GeneMark_model.77883_t
Valid prediction for GeneMark_model.77875_t
Valid prediction for GeneMark_model.77880_t
Valid prediction for GlimmerHMM_glimmerT_44698-T1
Valid prediction for GlimmerHMM_glimmerT_44677-T1
Valid prediction for GeneMark_model.77873_t
Valid prediction for GeneMark_model.77854_t
Valid prediction for GlimmerHMM_glimmerT_44686-T1
Valid prediction for snap_scaffold_19-snap.403-T1
Valid prediction for snap_scaffold_19-snap.405-T1
Valid prediction for GeneMark_model.77890_t
Valid prediction for snap_scaffold_19-snap.429-T1
Valid prediction for GeneMark_model.77863_t
Valid prediction for GeneMark_model.77852_t
Valid prediction for GeneMark_model.77850_t
Valid prediction for GlimmerHMM_glimmerT_44702-T1
Valid prediction for snap_scaffold_19-snap.411-T1
Valid prediction for snap_scaffold_19-snap.425-T1
Valid prediction for GeneMark_model.77872_t
Valid prediction for GeneMark_model.77889_t
Valid prediction for snap_scaffold_19-snap.414-T1
Valid prediction for GeneMark_model.77868_t
Valid prediction for GeneMark_model.77885_t
Valid prediction for Augustus_model.g29831.t1
Valid prediction for GlimmerHMM_glimmerT_44701-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 24333, rend_intergenic: 12696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28704, rend_intergenic: 24832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34049, rend_intergenic: 28837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42203, rend_intergenic: 38840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47454, rend_intergenic: 44319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60202, rend_intergenic: 54599  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74950, rend_intergenic: 71692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147861, rend_intergenic: 143857  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191832, rend_intergenic: 186988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194033, rend_intergenic: 192563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 228426
-exon list size: 558


building trellis

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91.6    
91.8    
92.0    
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92.9    
93.0    
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93.4    
93.6    
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94.5    
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95.0    
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95.9    
96.1    
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96.6    
96.8    
97.0    
97.1    
97.3    
97.5    
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98.0    
98.2    
98.4    
98.6    
98.8    
98.9    
99.1    
99.3    
99.5    
99.6    
99.8    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 24333, rend_intergenic: 12696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28704, rend_intergenic: 24832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34049, rend_intergenic: 28837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42203, rend_intergenic: 38840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47454, rend_intergenic: 44319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60202, rend_intergenic: 54599  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74950, rend_intergenic: 71692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147861, rend_intergenic: 143857  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191832, rend_intergenic: 186988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194033, rend_intergenic: 192563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support