-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_13134855-13312648 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_25839-T1 Valid prediction for snap_scaffold_19-snap.2605-T1 Valid prediction for snap_scaffold_19-snap.2585-T1 Valid prediction for snap_scaffold_19-snap.2626-T1 Valid prediction for snap_scaffold_19-snap.2608-T1 Couldn't classify 7660, 7797 Sorry, prediction pasa_asmbl_22661.p1 fails validation. (ATG) TC 4512-4730 GT AGG (ATC) AG 4875-5032 GT AGG (GGA) AG 5278-5471 GT ATG (GCG) AG 5557-5630 GT AGG (AAT) AG 5860-6027 GT AGG (GTT) AG 6621-6779 GT TGG (CTG) AG 7349-7465 GT AGG (TCG) AG 7660-7797 GT ATG -recovered pasa_asmbl_22661.p1, initial, 4512, 4730 -recovered pasa_asmbl_22661.p1, internal, 4875, 5032 -recovered pasa_asmbl_22661.p1, internal, 5278, 5471 -recovered pasa_asmbl_22661.p1, internal, 5557, 5630 -recovered pasa_asmbl_22661.p1, internal, 5860, 6027 -recovered pasa_asmbl_22661.p1, internal, 6621, 6779 -recovered pasa_asmbl_22661.p1, internal, 7349, 7465 -recovered pasa_asmbl_22661.p1, internal, 7660, 7797 Valid prediction for GlimmerHMM_glimmerT_46253-T1 Valid prediction for HiQ_model.g30875.t1 Valid prediction for snap_scaffold_19-snap.2603-T1 Valid prediction for GeneMark_model.80536_t Valid prediction for Augustus_model.g30885.t1 Valid prediction for GeneMark_model.80542_t Valid prediction for Augustus_model.g30876.t1 Valid prediction for snap_scaffold_19-snap.2623-T1 Sorry, intron length (8) is less than minimum required (10) Valid prediction for snap_scaffold_19-snap.2589-T1 Valid prediction for snap_scaffold_19-snap.2624-T1 Valid prediction for pasa_asmbl_22665.p1 Valid prediction for GlimmerHMM_glimmerT_46250-T1 Couldn't classify 35039, 35683 Sorry, prediction pasa_asmbl_22673.p1 fails validation. (GAC) CC 35039-35683 GT AGG (GAA) AG 35937-36222 GT AGG (GAC) AG 36319-36414 GT CAG (ACT) AG 36541-36691 GT CGG (GTA) AG 36770-36870 GT CGG (AGT) AG 36975-37099 GT CTG (AGT) AG 37274-37459 GT AGG (CCT) AG 37684-37836 GT TGG (GTG) AG 37984-38086 GT GGG (CTT) AG 38262-38358 GT AGG (GGA) AG 38434-38517 GT AGG (CCT) AG 38699-38808 GT TGG (GTA) AG 38897-39017 GT AAG (GTT) AG 39612-39725 GT GGG (GCT) AG 39840-39992 GT TGG (GTT) AG 40172-40270 GT ATG (CAT) AG 40428-40557 GT AGG (ATC) AG 40649-40795 GT AGG (GTG) AG 41318-41432 GT AGG (GTT) AG 41516-41601 GT AGG (TTT) AG 41752-41864 GT CGG (AGC) AG 41979-42090 CC GAC -recovered pasa_asmbl_22673.p1, terminal, 41979, 42090 -recovered pasa_asmbl_22673.p1, internal, 35937, 36222 -recovered pasa_asmbl_22673.p1, internal, 36319, 36414 -recovered pasa_asmbl_22673.p1, internal, 36541, 36691 -recovered pasa_asmbl_22673.p1, internal, 36770, 36870 -recovered pasa_asmbl_22673.p1, internal, 36975, 37099 -recovered pasa_asmbl_22673.p1, internal, 37274, 37459 -recovered pasa_asmbl_22673.p1, internal, 37684, 37836 -recovered pasa_asmbl_22673.p1, internal, 37984, 38086 -recovered pasa_asmbl_22673.p1, internal, 38262, 38358 -recovered pasa_asmbl_22673.p1, internal, 38434, 38517 -recovered pasa_asmbl_22673.p1, internal, 38699, 38808 -recovered pasa_asmbl_22673.p1, internal, 38897, 39017 -recovered pasa_asmbl_22673.p1, internal, 39612, 39725 -recovered pasa_asmbl_22673.p1, internal, 39840, 39992 -recovered pasa_asmbl_22673.p1, internal, 40172, 40270 -recovered pasa_asmbl_22673.p1, internal, 40428, 40557 -recovered pasa_asmbl_22673.p1, internal, 40649, 40795 -recovered pasa_asmbl_22673.p1, internal, 41318, 41432 -recovered pasa_asmbl_22673.p1, internal, 41516, 41601 -recovered pasa_asmbl_22673.p1, internal, 41752, 41864 Valid prediction for GeneMark_model.80520_t Valid prediction for GlimmerHMM_glimmerT_46272-T1 Valid prediction for GlimmerHMM_glimmerT_46255-T1 Valid prediction for GeneMark_model.80516_t Valid prediction for GlimmerHMM_glimmerT_46256-T1 Valid prediction for GlimmerHMM_glimmerT_46246-T1 Valid prediction for snap_scaffold_19-snap.2606-T1 Couldn't classify 8095, 8124 Sorry, prediction pasa_asmbl_22664.p1 fails validation. (CCC) TG 8095-8124 GT AGG (GAC) AG 8321-8437 GT AGG (GTG) AG 8550-8651 GT GGG (AGA) AG 8762-8826 GT AGG (GCT) AG 8963-9047 GT AGG (GCA) AG 9147-9274 GT GGG (AGC) AG 9402-9488 GT AAG (ACA) AG 9716-9872 GT GGG (GAT) AG 10085-10299 GT AGG (ATA) AG 10700-10868 GT AGG (CTG) AG 10978-11136 GT AGG (GGT) AG 11222-11344 GT TGG (ATA) AG 11429-11497 TA GAT -recovered pasa_asmbl_22664.p1, terminal, 11429, 11497 -recovered pasa_asmbl_22664.p1, internal, 8321, 8437 -recovered pasa_asmbl_22664.p1, internal, 8550, 8651 -recovered pasa_asmbl_22664.p1, internal, 8762, 8826 -recovered pasa_asmbl_22664.p1, internal, 8963, 9047 -recovered pasa_asmbl_22664.p1, internal, 9147, 9274 -recovered pasa_asmbl_22664.p1, internal, 9402, 9488 -recovered pasa_asmbl_22664.p1, internal, 9716, 9872 -recovered pasa_asmbl_22664.p1, internal, 10085, 10299 -recovered pasa_asmbl_22664.p1, internal, 10700, 10868 -recovered pasa_asmbl_22664.p1, internal, 10978, 11136 -recovered pasa_asmbl_22664.p1, internal, 11222, 11344 Valid prediction for Augustus_model.g30874.t1 Valid prediction for snap_scaffold_19-snap.2591-T1 Valid prediction for snap_scaffold_19-snap.2595-T1 Valid prediction for Augustus_model.g30886.t1 Valid prediction for GlimmerHMM_glimmerT_46265-T1 Valid prediction for GeneMark_model.80529_t Valid prediction for GeneMark_model.80544_t Valid prediction for snap_scaffold_19-snap.2607-T1 Valid prediction for snap_scaffold_19-snap.2620-T1 Valid prediction for GeneMark_model.80523_t Valid prediction for snap_scaffold_19-snap.2613-T1 Valid prediction for GeneMark_model.80522_t Valid prediction for GeneMark_model.80541_t Valid prediction for GeneMark_model.80535_t Valid prediction for pasa_asmbl_22674.p1 Couldn't classify 26894, 27070 Sorry, prediction pasa_asmbl_22669.p1 fails validation. (TTC) CG 26894-27070 GT AGG (GGT) AG 27150-27302 GT AGG (ATG) AG 27392-27466 AC AGA -recovered pasa_asmbl_22669.p1, terminal, 27392, 27466 -recovered pasa_asmbl_22669.p1, internal, 27150, 27302 Valid prediction for Augustus_model.g30888.t1 Valid prediction for GlimmerHMM_glimmerT_46275-T1 Valid prediction for GeneMark_model.80533_t Couldn't classify 32756, 32969 Couldn't classify 34917, 34921 Sorry, prediction pasa_asmbl_22672.p1 fails validation. (TCC) GG 32756-32969 GT TGG (ATG) AG 33172-33279 GT GTG (CTG) AG 33455-33549 GT CGG (GTG) AG 33730-33805 GT AGG (ACC) AG 34037-34206 GT AGG (AAG) AG 34377-34519 GT GAG (AGA) AG 34680-34774 GT CGG (AGG) AG 34917-34921 TC CCT add_exon() Sorry, pasa_asmbl_22672.p1 33172-33279-initial-1 is invalid. -recovered pasa_asmbl_22672.p1, initial, 33172, 33279 -recovered pasa_asmbl_22672.p1, internal, 33172, 33279 -recovered pasa_asmbl_22672.p1, internal, 33455, 33549 -recovered pasa_asmbl_22672.p1, internal, 33730, 33805 -recovered pasa_asmbl_22672.p1, internal, 34037, 34206 -recovered pasa_asmbl_22672.p1, internal, 34377, 34519 -recovered pasa_asmbl_22672.p1, internal, 34680, 34774 Valid prediction for HiQ_model.g30870.t1 Valid prediction for snap_scaffold_19-snap.2615-T1 Valid prediction for HiQ_model.g30873.t1 Valid prediction for GlimmerHMM_glimmerT_46276-T1 Valid prediction for GlimmerHMM_glimmerT_46257-T1 Valid prediction for GlimmerHMM_glimmerT_46266-T1 Valid prediction for CodingQuarry_transcript_25837-T1 Valid prediction for GeneMark_model.80527_t Valid prediction for GeneMark_model.80519_t Valid prediction for GeneMark_model.80537_t Valid prediction for GlimmerHMM_glimmerT_46258-T1 Valid prediction for snap_scaffold_19-snap.2616-T1 Valid prediction for GlimmerHMM_glimmerT_46273-T1 Valid prediction for snap_scaffold_19-snap.2602-T1 Valid prediction for CodingQuarry_transcript_25840-T1 Valid prediction for pasa_asmbl_22666.p1 Valid prediction for snap_scaffold_19-snap.2618-T1 Valid prediction for snap_scaffold_19-snap.2597-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_25845-T1 Valid prediction for snap_scaffold_19-snap.2614-T1 Valid prediction for snap_scaffold_19-snap.2601-T1 Valid prediction for HiQ_model.g30881.t1 Valid prediction for Augustus_model.g30887.t1 Valid prediction for Augustus_model.g30879.t1 Couldn't classify 4566, 4776 Sorry, prediction pasa_asmbl_21861.p1 fails validation. (TTC) AG 4566-4776 GT TGG (GTA) AG 5313-5404 AC AGA -recovered pasa_asmbl_21861.p1, terminal, 5313, 5404 -recovered pasa_asmbl_21861.p1, internal, 4566, 4776 Valid prediction for snap_scaffold_19-snap.2610-T1 Valid prediction for pasa_asmbl_21842.p1 Couldn't classify 94650, 94838 Sorry, prediction pasa_asmbl_21835.p1 fails validation. (TAT) CT 94650-94838 GT AGG (ACA) AG 95088-95258 GT TGG (ATG) AG 95852-95974 GT GGG (GAC) AG 96113-96247 GT AGG (GAT) AG 96322-96489 CT GAC -recovered pasa_asmbl_21835.p1, initial, 95852, 95974 -recovered pasa_asmbl_21835.p1, terminal, 96322, 96489 -recovered pasa_asmbl_21835.p1, internal, 95088, 95258 -recovered pasa_asmbl_21835.p1, internal, 95852, 95974 -recovered pasa_asmbl_21835.p1, internal, 96113, 96247 Valid prediction for pasa_asmbl_21822.p1 Valid prediction for GlimmerHMM_glimmerT_46269-T1 Valid prediction for GlimmerHMM_glimmerT_46268-T1 Valid prediction for GlimmerHMM_glimmerT_46254-T1 Valid prediction for GeneMark_model.80524_t Valid prediction for snap_scaffold_19-snap.2609-T1 Valid prediction for GeneMark_model.80540_t Valid prediction for CodingQuarry_transcript_25841-T1 Valid prediction for snap_scaffold_19-snap.2612-T1 Valid prediction for HiQ_model.g30872.t1 Couldn't classify 47975, 48047 Couldn't classify 48522, 48645 Sorry, prediction pasa_asmbl_21853.p1 fails validation. (CTC) AT 47975-48047 GT CGG (GAG) AG 48173-48431 GT GGG (GTG) AG 48522-48645 CT TGC -recovered pasa_asmbl_21853.p1, internal, 48173, 48431 Valid prediction for Augustus_model.g30871.t1 Valid prediction for snap_scaffold_19-snap.2617-T1 Valid prediction for GlimmerHMM_glimmerT_46263-T1 Valid prediction for snap_scaffold_19-snap.2587-T1 Valid prediction for snap_scaffold_19-snap.2586-T1 Valid prediction for GlimmerHMM_glimmerT_46252-T1 Valid prediction for pasa_asmbl_21860.p1 Valid prediction for snap_scaffold_19-snap.2625-T1 Valid prediction for GeneMark_model.80538_t Valid prediction for GeneMark_model.80526_t Valid prediction for snap_scaffold_19-snap.2593-T1 Valid prediction for snap_scaffold_19-snap.2598-T1 Valid prediction for GeneMark_model.80528_t Valid prediction for GlimmerHMM_glimmerT_46270-T1 Valid prediction for snap_scaffold_19-snap.2599-T1 Valid prediction for GlimmerHMM_glimmerT_46248-T1 Valid prediction for GlimmerHMM_glimmerT_46262-T1 Valid prediction for Augustus_model.g30884.t1 Valid prediction for pasa_asmbl_21837.p1 Valid prediction for snap_scaffold_19-snap.2594-T1 Valid prediction for HiQ_model.g30878.t1 Valid prediction for GeneMark_model.80531_t Valid prediction for CodingQuarry_transcript_25842-T1 Valid prediction for snap_scaffold_19-snap.2621-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for snap_scaffold_19-snap.2590-T1 Valid prediction for GeneMark_model.80521_t Valid prediction for CodingQuarry_transcript_25838-T1 Valid prediction for HiQ_model.g30877.t1 Valid prediction for GeneMark_model.80518_t Couldn't classify 52235, 52298 Sorry, prediction pasa_asmbl_21850.p1 fails validation. (TGG) TG 52235-52298 GT CGG (ACT) AG 53178-53318 GT AGG (TTG) AG 54314-54492 TT GAT -recovered pasa_asmbl_21850.p1, terminal, 54314, 54492 -recovered pasa_asmbl_21850.p1, internal, 53178, 53318 Valid prediction for GeneMark_model.80534_t Couldn't classify 94650, 94838 Sorry, prediction pasa_asmbl_21841.p1 fails validation. (TAT) CT 94650-94838 GT AGG (ACA) AG 95088-95258 GT TGG (ATG) AG 95852-95974 GT GGG (GAC) AG 96113-96247 GT AGG (GAT) AG 96322-96474 GT AGG (GAA) AG 97551-97721 GT GTG (GAG) AG 98928-99050 GT AGG (GAG) AG 99165-99337 GT ACG (GCT) AG 99492-99627 GT AGG (GAG) AG 100320-100495 GT AGG (ATC) AG 100716-100863 GT AGG (GTT) AG 100946-101083 GT AGG (GTG) AG 101212-101361 GT AGG (TTG) AG 101663-101761 GT AGG (GAA) AG 101859-101958 GT CAG (CTG) AG 102577-102746 GT AGG (GGC) AG 104121-104238 GT CAG (TTG) AG 104333-104544 GT AGG (CAC) AG 104632-104774 GT CAG (GGT) AG 104877-105066 GT AGG (GAG) AG 106342-106514 GT AGG (GGC) AG 106593-106749 GT GGG (GGT) AG 107271-107385 GT AGG (ATA) AG 108327-108595 GT AGG (GCC) AG 108990-109136 GT AGG (ATC) AG 110448-110517 GT TGG (GCT) AG 110676-110736 GT AAG (AAA) AG 111512-111547 GT CTG (CCA) AG 114295-114356 GT GGG (CTG) AG 114447-114521 GT TCG (TGG) AG 114775-114976 GT ACG (AGG) AG 115116-115201 GT CTG (TCC) AG 115468-115625 GT TTG (GCC) AG 116021-116187 GT AGG (GTA) AG 116331-116442 GT CGG (ACA) AG 116519-116655 GT ACG (TCC) AG 116939-116977 GT GCG (CCC) AG 117486-117551 GT CGG (GTT) AG 118060-118125 GT ATG (TGA) AG 118540-118698 GC AGG (AAA) AG 118781-119024 GT AGG (ACA) AG 119310-119424 GT GGG (GTG) AG 119500-119589 GT GGG (GAG) AG 119725-119747 GA GAG -recovered pasa_asmbl_21841.p1, initial, 95852, 95974 -recovered pasa_asmbl_21841.p1, terminal, 119725, 119747 -recovered pasa_asmbl_21841.p1, internal, 95088, 95258 -recovered pasa_asmbl_21841.p1, internal, 95852, 95974 -recovered pasa_asmbl_21841.p1, internal, 96113, 96247 -recovered pasa_asmbl_21841.p1, internal, 96322, 96474 -recovered pasa_asmbl_21841.p1, internal, 97551, 97721 -recovered pasa_asmbl_21841.p1, internal, 98928, 99050 -recovered pasa_asmbl_21841.p1, internal, 99165, 99337 -recovered pasa_asmbl_21841.p1, internal, 99492, 99627 -recovered pasa_asmbl_21841.p1, internal, 100320, 100495 -recovered pasa_asmbl_21841.p1, internal, 100716, 100863 -recovered pasa_asmbl_21841.p1, internal, 100946, 101083 -recovered pasa_asmbl_21841.p1, internal, 101212, 101361 -recovered pasa_asmbl_21841.p1, internal, 101663, 101761 -recovered pasa_asmbl_21841.p1, internal, 101859, 101958 -recovered pasa_asmbl_21841.p1, internal, 102577, 102746 -recovered pasa_asmbl_21841.p1, internal, 104121, 104238 -recovered pasa_asmbl_21841.p1, internal, 104333, 104544 -recovered pasa_asmbl_21841.p1, internal, 104632, 104774 -recovered pasa_asmbl_21841.p1, internal, 104877, 105066 -recovered pasa_asmbl_21841.p1, internal, 106342, 106514 -recovered pasa_asmbl_21841.p1, internal, 106593, 106749 -recovered pasa_asmbl_21841.p1, internal, 107271, 107385 -recovered pasa_asmbl_21841.p1, internal, 108327, 108595 -recovered pasa_asmbl_21841.p1, internal, 108990, 109136 -recovered pasa_asmbl_21841.p1, internal, 110448, 110517 -recovered pasa_asmbl_21841.p1, internal, 110676, 110736 -recovered pasa_asmbl_21841.p1, internal, 111512, 111547 -recovered pasa_asmbl_21841.p1, internal, 114295, 114356 -recovered pasa_asmbl_21841.p1, internal, 114447, 114521 -recovered pasa_asmbl_21841.p1, internal, 114775, 114976 -recovered pasa_asmbl_21841.p1, internal, 115116, 115201 -recovered pasa_asmbl_21841.p1, internal, 115468, 115625 -recovered pasa_asmbl_21841.p1, internal, 116021, 116187 -recovered pasa_asmbl_21841.p1, internal, 116331, 116442 -recovered pasa_asmbl_21841.p1, internal, 116519, 116655 -recovered pasa_asmbl_21841.p1, internal, 116939, 116977 -recovered pasa_asmbl_21841.p1, internal, 117486, 117551 -recovered pasa_asmbl_21841.p1, internal, 118060, 118125 -recovered pasa_asmbl_21841.p1, internal, 118540, 118698 -recovered pasa_asmbl_21841.p1, internal, 118781, 119024 -recovered pasa_asmbl_21841.p1, internal, 119310, 119424 -recovered pasa_asmbl_21841.p1, internal, 119500, 119589 Valid prediction for snap_scaffold_19-snap.2596-T1 Couldn't classify 71184, 71249 Sorry, prediction pasa_asmbl_21831.p1 fails validation. (TCA) CC 71184-71249 GT AGG (ACA) AG 71820-71912 GT TGG (GTA) AG 72310-72387 GT ACG (GTT) AG 72536-72628 GT AGG (GTA) AG 75416-75588 GT AGG (GCC) AG 75679-75877 AA AAA add_exon() Sorry, pasa_asmbl_21831.p1 75416-75588-terminal-2 is invalid. -recovered pasa_asmbl_21831.p1, terminal, 75416, 75588 -recovered pasa_asmbl_21831.p1, terminal, 75679, 75877 -recovered pasa_asmbl_21831.p1, internal, 71820, 71912 -recovered pasa_asmbl_21831.p1, internal, 72310, 72387 -recovered pasa_asmbl_21831.p1, internal, 72536, 72628 -recovered pasa_asmbl_21831.p1, internal, 75416, 75588 Valid prediction for GeneMark_model.80539_t Valid prediction for GeneMark_model.80532_t Valid prediction for snap_scaffold_19-snap.2619-T1 Valid prediction for snap_scaffold_19-snap.2622-T1 Valid prediction for Augustus_model.g30880.t1 Valid prediction for GeneMark_model.80517_t Valid prediction for snap_scaffold_19-snap.2592-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_19-snap.2611-T1 Couldn't classify 43872, 43991 Sorry, prediction pasa_asmbl_21857.p1 fails validation. (AGC) TG 43872-43991 GT GCG (GGT) AG 44106-44194 GT AGG (TGT) AG 44305-44430 GT AGG (TCA) AG 44542-44594 GT AGG (ACC) AG 45263-45300 GC GAG -recovered pasa_asmbl_21857.p1, terminal, 45263, 45300 -recovered pasa_asmbl_21857.p1, internal, 44106, 44194 -recovered pasa_asmbl_21857.p1, internal, 44305, 44430 -recovered pasa_asmbl_21857.p1, internal, 44542, 44594 -recovered pasa_asmbl_21857.p1, internal, 45263, 45300 Valid prediction for CodingQuarry_transcript_25844-T1 Couldn't classify 45771, 45782 Couldn't classify 46909, 46951 Sorry, prediction pasa_asmbl_21855.p1 fails validation. (CTC) CT 45771-45782 GT AGG (GTG) AG 45931-46042 GT TGG (GGT) AG 46154-46216 GT AGG (TGG) AG 46305-46578 GT AGG (CGT) AG 46708-46815 GT AAG (ATG) AG 46909-46951 AC AGA -recovered pasa_asmbl_21855.p1, internal, 45931, 46042 -recovered pasa_asmbl_21855.p1, internal, 46154, 46216 -recovered pasa_asmbl_21855.p1, internal, 46305, 46578 -recovered pasa_asmbl_21855.p1, internal, 46708, 46815 Valid prediction for snap_scaffold_19-snap.2604-T1 Valid prediction for GlimmerHMM_glimmerT_46271-T1 Valid prediction for GlimmerHMM_glimmerT_46264-T1 Valid prediction for GeneMark_model.80530_t Valid prediction for GlimmerHMM_glimmerT_46251-T1 Valid prediction for GlimmerHMM_glimmerT_46249-T1 Valid prediction for GeneMark_model.80525_t Valid prediction for GlimmerHMM_glimmerT_46274-T1 Valid prediction for snap_scaffold_19-snap.2588-T1 Valid prediction for GlimmerHMM_glimmerT_46260-T1 Valid prediction for Augustus_model.g30883.t1 Valid prediction for GlimmerHMM_glimmerT_46261-T1 Valid prediction for Augustus_model.g30882.t1 Valid prediction for GlimmerHMM_glimmerT_46267-T1 Valid prediction for GlimmerHMM_glimmerT_46259-T1 Valid prediction for pasa_asmbl_21852.p2 Valid prediction for snap_scaffold_19-snap.2600-T1 Valid prediction for GlimmerHMM_glimmerT_46247-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11497, rend_intergenic: 8300 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28001, rend_intergenic: 22245 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35619, rend_intergenic: 32636 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42090, rend_intergenic: 35958 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59320, rend_intergenic: 44394 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63957, rend_intergenic: 60282 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73754, rend_intergenic: 65170 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100905, rend_intergenic: 75034 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110724, rend_intergenic: 103674 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125722, rend_intergenic: 124491 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128247, rend_intergenic: 126040 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 136049, rend_intergenic: 129378 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145542, rend_intergenic: 136906 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154532, rend_intergenic: 150329 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 177794 -exon list size: 857 building trellis 0.1 0.2 0.3 0.5 0.6 0.7 0.8 0.9 1.0 1.2 1.3 1.4 1.5 1.6 1.7 1.9 2.0 2.1 2.2 2.3 2.4 2.6 2.7 2.8 2.9 3.0 3.1 3.3 3.4 3.5 3.6 3.7 3.8 4.0 4.1 4.2 4.3 4.4 4.5 4.7 4.8 4.9 5.0 5.1 5.2 5.4 5.5 5.6 5.7 5.8 5.9 6.1 6.2 6.3 6.4 6.5 6.6 6.8 6.9 7.0 7.1 7.2 7.3 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.3 8.4 8.5 8.6 8.7 8.8 9.0 9.1 9.2 9.3 9.4 9.5 9.7 9.8 9.9 10.0 10.1 10.2 10.4 10.5 10.6 10.7 10.8 10.9 11.1 11.2 11.3 11.4 11.5 11.6 11.8 11.9 12.0 12.1 12.2 12.3 12.5 12.6 12.7 12.8 12.9 13.0 13.2 13.3 13.4 13.5 13.6 13.7 13.9 14.0 14.1 14.2 14.3 14.4 14.6 14.7 14.8 14.9 15.0 15.1 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.1 16.2 16.3 16.4 16.5 16.6 16.8 16.9 17.0 17.1 17.2 17.3 17.5 17.6 17.7 17.8 17.9 18.0 18.2 18.3 18.4 18.5 18.6 18.7 18.9 19.0 19.1 19.2 19.3 19.4 19.6 19.7 19.8 19.9 20.0 20.1 20.3 20.4 20.5 20.6 20.7 20.8 21.0 21.1 21.2 21.3 21.4 21.5 21.7 21.8 21.9 22.0 22.1 22.2 22.4 22.5 22.6 22.7 22.8 22.9 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.9 24.0 24.1 24.2 24.3 24.4 24.6 24.7 24.8 24.9 25.0 25.1 25.3 25.4 25.5 25.6 25.7 25.8 26.0 26.1 26.2 26.3 26.4 26.5 26.7 26.8 26.9 27.0 27.1 27.2 27.4 27.5 27.6 27.7 27.8 27.9 28.1 28.2 28.3 28.4 28.5 28.6 28.8 28.9 29.0 29.1 29.2 29.3 29.5 29.6 29.7 29.8 29.9 30.0 30.2 30.3 30.4 30.5 30.6 30.7 30.8 31.0 31.1 31.2 31.3 31.4 31.5 31.7 31.8 31.9 32.0 32.1 32.2 32.4 32.5 32.6 32.7 32.8 32.9 33.1 33.2 33.3 33.4 33.5 33.6 33.8 33.9 34.0 34.1 34.2 34.3 34.5 34.6 34.7 34.8 34.9 35.0 35.2 35.3 35.4 35.5 35.6 35.7 35.9 36.0 36.1 36.2 36.3 36.4 36.6 36.7 36.8 36.9 37.0 37.1 37.3 37.4 37.5 37.6 37.7 37.8 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.8 38.9 39.0 39.1 39.2 39.3 39.5 39.6 39.7 39.8 39.9 40.0 40.2 40.3 40.4 40.5 40.6 40.7 40.9 41.0 41.1 41.2 41.3 41.4 41.6 41.7 41.8 41.9 42.0 42.1 42.3 42.4 42.5 42.6 42.7 42.8 43.0 43.1 43.2 43.3 43.4 43.5 43.7 43.8 43.9 44.0 44.1 44.2 44.4 44.5 44.6 44.7 44.8 44.9 45.1 45.2 45.3 45.4 45.5 45.6 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.6 46.7 46.8 46.9 47.0 47.1 47.3 47.4 47.5 47.6 47.7 47.8 48.0 48.1 48.2 48.3 48.4 48.5 48.7 48.8 48.9 49.0 49.1 49.2 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.8 50.9 51.0 51.1 51.2 51.3 51.5 51.6 51.7 51.8 51.9 52.0 52.2 52.3 52.4 52.5 52.6 52.7 52.9 53.0 53.1 53.2 53.3 53.4 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.4 54.5 54.6 54.7 54.8 54.9 55.1 55.2 55.3 55.4 55.5 55.6 55.8 55.9 56.0 56.1 56.2 56.3 56.5 56.6 56.7 56.8 56.9 57.0 57.2 57.3 57.4 57.5 57.6 57.7 57.9 58.0 58.1 58.2 58.3 58.4 58.6 58.7 58.8 58.9 59.0 59.1 59.3 59.4 59.5 59.6 59.7 59.8 60.0 60.1 60.2 60.3 60.4 60.5 60.7 60.8 60.9 61.0 61.1 61.2 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.2 62.3 62.4 62.5 62.6 62.7 62.9 63.0 63.1 63.2 63.3 63.4 63.6 63.7 63.8 63.9 64.0 64.1 64.3 64.4 64.5 64.6 64.7 64.8 65.0 65.1 65.2 65.3 65.4 65.5 65.7 65.8 65.9 66.0 66.1 66.2 66.4 66.5 66.6 66.7 66.8 66.9 67.1 67.2 67.3 67.4 67.5 67.6 67.8 67.9 68.0 68.1 68.2 68.3 68.5 68.6 68.7 68.8 68.9 69.0 69.2 69.3 69.4 69.5 69.6 69.7 69.8 70.0 70.1 70.2 70.3 70.4 70.5 70.7 70.8 70.9 71.0 71.1 71.2 71.4 71.5 71.6 71.7 71.8 71.9 72.1 72.2 72.3 72.4 72.5 72.6 72.8 72.9 73.0 73.1 73.2 73.3 73.5 73.6 73.7 73.8 73.9 74.0 74.2 74.3 74.4 74.5 74.6 74.7 74.9 75.0 75.1 75.2 75.3 75.4 75.6 75.7 75.8 75.9 76.0 76.1 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.1 77.2 77.3 77.4 77.5 77.6 77.8 77.9 78.0 78.1 78.2 78.3 78.5 78.6 78.7 78.8 78.9 79.0 79.2 79.3 79.4 79.5 79.6 79.7 79.9 80.0 80.1 80.2 80.3 80.4 80.6 80.7 80.8 80.9 81.0 81.1 81.3 81.4 81.5 81.6 81.7 81.8 82.0 82.1 82.2 82.3 82.4 82.5 82.7 82.8 82.9 83.0 83.1 83.2 83.4 83.5 83.6 83.7 83.8 83.9 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.9 85.0 85.1 85.2 85.3 85.4 85.6 85.7 85.8 85.9 86.0 86.1 86.3 86.4 86.5 86.6 86.7 86.8 87.0 87.1 87.2 87.3 87.4 87.5 87.7 87.8 87.9 88.0 88.1 88.2 88.4 88.5 88.6 88.7 88.8 88.9 89.1 89.2 89.3 89.4 89.5 89.6 89.8 89.9 90.0 90.1 90.2 90.3 90.5 90.6 90.7 90.8 90.9 91.0 91.2 91.3 91.4 91.5 91.6 91.7 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.7 92.8 92.9 93.0 93.1 93.2 93.4 93.5 93.6 93.7 93.8 93.9 94.1 94.2 94.3 94.4 94.5 94.6 94.8 94.9 95.0 95.1 95.2 95.3 95.5 95.6 95.7 95.8 95.9 96.0 96.2 96.3 96.4 96.5 96.6 96.7 96.9 97.0 97.1 97.2 97.3 97.4 97.6 97.7 97.8 97.9 98.0 98.1 98.3 98.4 98.5 98.6 98.7 98.8 99.0 99.1 99.2 99.3 99.4 99.5 99.7 99.8 99.9 -found 29 predictions from path traversal Error with prediction: snap lend_intergenic: 11497, rend_intergenic: 8300 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28001, rend_intergenic: 22245 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35619, rend_intergenic: 32636 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42090, rend_intergenic: 35958 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59320, rend_intergenic: 44394 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63957, rend_intergenic: 60282 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73754, rend_intergenic: 65170 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100905, rend_intergenic: 75034 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110724, rend_intergenic: 103674 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125722, rend_intergenic: 124491 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128247, rend_intergenic: 126040 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 136049, rend_intergenic: 129378 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145542, rend_intergenic: 136906 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154532, rend_intergenic: 150329 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 24 predictions persist after filtering for low support