-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_1302672-1491384

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.77749_t
Valid prediction for GlimmerHMM_glimmerT_44622-T1
Valid prediction for snap_scaffold_19-snap.306-T1
Valid prediction for HiQ_model.g29805.t1
Valid prediction for snap_scaffold_19-snap.285-T1
Valid prediction for GeneMark_model.77704_t
Valid prediction for GlimmerHMM_glimmerT_44626-T1
Valid prediction for GeneMark_model.77714_t
Valid prediction for Augustus_model.g29803.t1
Valid prediction for snap_scaffold_19-snap.301-T1
Valid prediction for snap_scaffold_19-snap.282-T1
Valid prediction for snap_scaffold_19-snap.296-T1
Valid prediction for Augustus_model.g29798.t1
Valid prediction for snap_scaffold_19-snap.317-T1
Valid prediction for GlimmerHMM_glimmerT_44627-T1
Valid prediction for Augustus_model.g29799.t1
Valid prediction for GeneMark_model.77708_t
Couldn't classify 177741, 178076
Sorry, prediction pasa_asmbl_22038.p2 fails validation.
(CTG)	 GC	177741-178076	CT	AGC
Valid prediction for snap_scaffold_19-snap.287-T1
Valid prediction for GeneMark_model.77721_t
Valid prediction for GeneMark_model.77712_t
Valid prediction for GeneMark_model.77740_t
Valid prediction for snap_scaffold_19-snap.303-T1
Valid prediction for GeneMark_model.77743_t
Valid prediction for GeneMark_model.77747_t
Valid prediction for GlimmerHMM_glimmerT_44618-T1
Valid prediction for snap_scaffold_19-snap.322-T1
Valid prediction for Augustus_model.g29800.t1
Valid prediction for GlimmerHMM_glimmerT_44632-T1
Valid prediction for GeneMark_model.77717_t
Valid prediction for GeneMark_model.77705_t
Valid prediction for GeneMark_model.77729_t
Valid prediction for GeneMark_model.77724_t
Valid prediction for GlimmerHMM_glimmerT_44631-T1
Valid prediction for Augustus_model.g29802.t1
Valid prediction for GlimmerHMM_glimmerT_44608-T1
Valid prediction for GeneMark_model.77735_t
Valid prediction for snap_scaffold_19-snap.297-T1
Valid prediction for GeneMark_model.77719_t
Valid prediction for snap_scaffold_19-snap.320-T1
Valid prediction for snap_scaffold_19-snap.299-T1
Valid prediction for snap_scaffold_19-snap.291-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GeneMark_model.77732_t
Valid prediction for GlimmerHMM_glimmerT_44628-T1
Valid prediction for snap_scaffold_19-snap.294-T1
Valid prediction for GlimmerHMM_glimmerT_44615-T1
Valid prediction for GlimmerHMM_glimmerT_44623-T1
Valid prediction for GeneMark_model.77750_t
Valid prediction for GeneMark_model.77736_t
Valid prediction for snap_scaffold_19-snap.283-T1
Valid prediction for GlimmerHMM_glimmerT_44611-T1
Valid prediction for GeneMark_model.77715_t
Valid prediction for GlimmerHMM_glimmerT_44613-T1
Valid prediction for snap_scaffold_19-snap.288-T1
Valid prediction for snap_scaffold_19-snap.314-T1
Valid prediction for GeneMark_model.77738_t
Valid prediction for GeneMark_model.77734_t
Valid prediction for snap_scaffold_19-snap.312-T1
Valid prediction for GeneMark_model.77742_t
Couldn't classify 160334, 160765
Sorry, prediction pasa_asmbl_22037.p1 fails validation.
(TGC)	 TC	160334-160765	GT	CTG
Valid prediction for snap_scaffold_19-snap.305-T1
Valid prediction for GeneMark_model.77730_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.298-T1
Valid prediction for snap_scaffold_19-snap.284-T1
Valid prediction for snap_scaffold_19-snap.304-T1
Valid prediction for snap_scaffold_19-snap.308-T1
Valid prediction for GlimmerHMM_glimmerT_44621-T1
Valid prediction for Augustus_model.g29801.t1
Valid prediction for GeneMark_model.77737_t
Valid prediction for GeneMark_model.77722_t
Valid prediction for GeneMark_model.77725_t
Valid prediction for GeneMark_model.77707_t
Valid prediction for GeneMark_model.77718_t
Valid prediction for GlimmerHMM_glimmerT_44609-T1
Valid prediction for Augustus_model.g29796.t1
Valid prediction for GeneMark_model.77710_t
Valid prediction for snap_scaffold_19-snap.321-T1
Valid prediction for GeneMark_model.77728_t
Valid prediction for GeneMark_model.77739_t
Valid prediction for Augustus_model.g29804.t1
Valid prediction for snap_scaffold_19-snap.307-T1
Valid prediction for Augustus_model.g29795.t1
Valid prediction for snap_scaffold_19-snap.319-T1
Valid prediction for GlimmerHMM_glimmerT_44610-T1
Valid prediction for GlimmerHMM_glimmerT_44634-T1
Valid prediction for GeneMark_model.77709_t
Valid prediction for snap_scaffold_19-snap.293-T1
Valid prediction for GlimmerHMM_glimmerT_44612-T1
Valid prediction for GeneMark_model.77751_t
Valid prediction for GeneMark_model.77745_t
Valid prediction for GlimmerHMM_glimmerT_44630-T1
Valid prediction for GlimmerHMM_glimmerT_44624-T1
Valid prediction for snap_scaffold_19-snap.315-T1
Valid prediction for GeneMark_model.77733_t
Valid prediction for snap_scaffold_19-snap.300-T1
Valid prediction for GeneMark_model.77723_t
Valid prediction for snap_scaffold_19-snap.325-T1
Valid prediction for GlimmerHMM_glimmerT_44625-T1
Valid prediction for snap_scaffold_19-snap.318-T1
Valid prediction for snap_scaffold_19-snap.302-T1
Valid prediction for snap_scaffold_19-snap.295-T1
Valid prediction for Augustus_model.g29797.t1
Valid prediction for snap_scaffold_19-snap.290-T1
Valid prediction for GeneMark_model.77746_t
Valid prediction for GlimmerHMM_glimmerT_44629-T1
Valid prediction for GeneMark_model.77720_t
Valid prediction for GeneMark_model.77716_t
Valid prediction for GeneMark_model.77744_t
Valid prediction for snap_scaffold_19-snap.323-T1
Valid prediction for GlimmerHMM_glimmerT_44620-T1
Valid prediction for snap_scaffold_19-snap.292-T1
Valid prediction for snap_scaffold_19-snap.326-T1
Valid prediction for snap_scaffold_19-snap.286-T1
Valid prediction for snap_scaffold_19-snap.313-T1
Valid prediction for snap_scaffold_19-snap.311-T1
Valid prediction for GeneMark_model.77726_t
Valid prediction for GlimmerHMM_glimmerT_44619-T1
Valid prediction for GeneMark_model.77741_t
Valid prediction for GlimmerHMM_glimmerT_44614-T1
Valid prediction for snap_scaffold_19-snap.310-T1
Valid prediction for GlimmerHMM_glimmerT_44617-T1
Valid prediction for snap_scaffold_19-snap.316-T1
Valid prediction for GeneMark_model.77706_t
Valid prediction for GlimmerHMM_glimmerT_44633-T1
Valid prediction for GeneMark_model.77748_t
Valid prediction for GeneMark_model.77713_t
Valid prediction for GeneMark_model.77731_t
Valid prediction for GlimmerHMM_glimmerT_44616-T1
Valid prediction for snap_scaffold_19-snap.289-T1
Valid prediction for snap_scaffold_19-snap.324-T1
Valid prediction for GeneMark_model.77711_t
Valid prediction for snap_scaffold_19-snap.309-T1
Valid prediction for GeneMark_model.77727_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 19914, rend_intergenic: 13405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29451, rend_intergenic: 20288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34275, rend_intergenic: 30516  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41305, rend_intergenic: 39017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55563, rend_intergenic: 52038  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56498, rend_intergenic: 56186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61971, rend_intergenic: 57141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93424, rend_intergenic: 87741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120214, rend_intergenic: 96661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122219, rend_intergenic: 120232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144481, rend_intergenic: 138815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155647, rend_intergenic: 145609  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160795, rend_intergenic: 158354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165823, rend_intergenic: 163872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170071, rend_intergenic: 168356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186332, rend_intergenic: 173801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 188713
-exon list size: 687


building trellis

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-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 19914, rend_intergenic: 13405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29451, rend_intergenic: 20288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34275, rend_intergenic: 30516  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41305, rend_intergenic: 39017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55563, rend_intergenic: 52038  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56498, rend_intergenic: 56186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61971, rend_intergenic: 57141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93424, rend_intergenic: 87741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120214, rend_intergenic: 96661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122219, rend_intergenic: 120232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144481, rend_intergenic: 138815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155647, rend_intergenic: 145609  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160795, rend_intergenic: 158354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165823, rend_intergenic: 163872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170071, rend_intergenic: 168356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186332, rend_intergenic: 173801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support