-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_10383288-10526589

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g30542.t1
Valid prediction for GlimmerHMM_glimmerT_45780-T1
Valid prediction for GeneMark_model.79882_t
Valid prediction for GeneMark_model.79857_t
Valid prediction for GeneMark_model.79887_t
Valid prediction for GlimmerHMM_glimmerT_45792-T1
Valid prediction for GeneMark_model.79875_t
Valid prediction for snap_scaffold_19-snap.2013-T1
Valid prediction for GeneMark_model.79869_t
Valid prediction for GeneMark_model.79867_t
Valid prediction for GeneMark_model.79874_t
Valid prediction for GeneMark_model.79889_t
Valid prediction for GeneMark_model.79861_t
Valid prediction for GeneMark_model.79850_t
Valid prediction for snap_scaffold_19-snap.1983-T1
Valid prediction for snap_scaffold_19-snap.1985-T1
Valid prediction for GlimmerHMM_glimmerT_45798-T1
Valid prediction for Augustus_model.g30547.t1
Valid prediction for snap_scaffold_19-snap.1994-T1
Valid prediction for snap_scaffold_19-snap.1992-T1
Valid prediction for snap_scaffold_19-snap.2007-T1
Valid prediction for snap_scaffold_19-snap.2008-T1
Valid prediction for GlimmerHMM_glimmerT_45778-T1
Valid prediction for GeneMark_model.79854_t
Valid prediction for GeneMark_model.79872_t
Valid prediction for Augustus_model.g30539.t1
Valid prediction for snap_scaffold_19-snap.1996-T1
Valid prediction for snap_scaffold_19-snap.2011-T1
Valid prediction for GlimmerHMM_glimmerT_45786-T1
Valid prediction for Augustus_model.g30543.t1
Valid prediction for GlimmerHMM_glimmerT_45783-T1
Valid prediction for GlimmerHMM_glimmerT_45788-T1
Valid prediction for GlimmerHMM_glimmerT_45795-T1
Valid prediction for snap_scaffold_19-snap.2004-T1
Valid prediction for GeneMark_model.79866_t
Valid prediction for GeneMark_model.79862_t
Valid prediction for GeneMark_model.79880_t
Valid prediction for GeneMark_model.79858_t
Valid prediction for snap_scaffold_19-snap.1999-T1
Valid prediction for GeneMark_model.79852_t
Valid prediction for GlimmerHMM_glimmerT_45782-T1
Valid prediction for GlimmerHMM_glimmerT_45799-T1
Valid prediction for GlimmerHMM_glimmerT_45801-T1
Valid prediction for snap_scaffold_19-snap.1988-T1
Valid prediction for GeneMark_model.79878_t
Valid prediction for snap_scaffold_19-snap.2005-T1
Valid prediction for Augustus_model.g30541.t1
Valid prediction for GlimmerHMM_glimmerT_45791-T1
Valid prediction for GeneMark_model.79864_t
Valid prediction for GeneMark_model.79870_t
Valid prediction for snap_scaffold_19-snap.1984-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.2002-T1
Valid prediction for snap_scaffold_19-snap.2000-T1
Valid prediction for Augustus_model.g30538.t1
Valid prediction for GlimmerHMM_glimmerT_45794-T1
Valid prediction for GeneMark_model.79876_t
Valid prediction for GeneMark_model.79856_t
Valid prediction for GlimmerHMM_glimmerT_45800-T1
Valid prediction for snap_scaffold_19-snap.2010-T1
Valid prediction for snap_scaffold_19-snap.1982-T1
Valid prediction for GeneMark_model.79849_t
Valid prediction for GeneMark_model.79860_t
Valid prediction for snap_scaffold_19-snap.2009-T1
Valid prediction for GlimmerHMM_glimmerT_45790-T1
Valid prediction for GeneMark_model.79873_t
Valid prediction for GeneMark_model.79863_t
Valid prediction for snap_scaffold_19-snap.1986-T1
Valid prediction for GlimmerHMM_glimmerT_45779-T1
Valid prediction for GeneMark_model.79865_t
Valid prediction for GlimmerHMM_glimmerT_45796-T1
Valid prediction for GlimmerHMM_glimmerT_45781-T1
Valid prediction for GlimmerHMM_glimmerT_45789-T1
Valid prediction for GlimmerHMM_glimmerT_45785-T1
Valid prediction for Augustus_model.g30546.t1
Valid prediction for Augustus_model.g30545.t1
Valid prediction for Augustus_model.g30540.t1
Valid prediction for GlimmerHMM_glimmerT_45793-T1
Valid prediction for GeneMark_model.79886_t
Valid prediction for Augustus_model.g30544.t1
Valid prediction for snap_scaffold_19-snap.1989-T1
Valid prediction for snap_scaffold_19-snap.1998-T1
Valid prediction for snap_scaffold_19-snap.1980-T1
Valid prediction for GeneMark_model.79881_t
Valid prediction for snap_scaffold_19-snap.1981-T1
Valid prediction for GlimmerHMM_glimmerT_45784-T1
Valid prediction for snap_scaffold_19-snap.1995-T1
Valid prediction for GeneMark_model.79853_t
Valid prediction for GeneMark_model.79884_t
Valid prediction for GeneMark_model.79868_t
Valid prediction for GlimmerHMM_glimmerT_45797-T1
Valid prediction for snap_scaffold_19-snap.2012-T1
Valid prediction for snap_scaffold_19-snap.1991-T1
Valid prediction for GeneMark_model.79871_t
Valid prediction for snap_scaffold_19-snap.1993-T1
Valid prediction for GeneMark_model.79890_t
Valid prediction for snap_scaffold_19-snap.1990-T1
Valid prediction for GeneMark_model.79859_t
Valid prediction for snap_scaffold_19-snap.1987-T1
Valid prediction for snap_scaffold_19-snap.2006-T1
Valid prediction for GlimmerHMM_glimmerT_45787-T1
Valid prediction for GeneMark_model.79877_t
Valid prediction for GeneMark_model.79851_t
Valid prediction for snap_scaffold_19-snap.2001-T1
Valid prediction for snap_scaffold_19-snap.2003-T1
Valid prediction for snap_scaffold_19-snap.1997-T1
Valid prediction for GeneMark_model.79879_t
Valid prediction for GeneMark_model.79888_t
Valid prediction for GeneMark_model.79883_t
Valid prediction for GeneMark_model.79855_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 72213, rend_intergenic: 64944  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77552, rend_intergenic: 74925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78604, rend_intergenic: 77831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89766, rend_intergenic: 85473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96833, rend_intergenic: 95085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99300, rend_intergenic: 97002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112055, rend_intergenic: 109235  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122727, rend_intergenic: 118499  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126532, rend_intergenic: 124614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132511, rend_intergenic: 129187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139465, rend_intergenic: 136623  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 143302
-exon list size: 433


building trellis

0.2    
0.5    
0.7    
0.9    
1.1    
1.4    
1.6    
1.8    
2.1    
2.3    
2.5    
2.8    
3.0    
3.2    
3.4    
3.7    
3.9    
4.1    
4.4    
4.6    
4.8    
5.1    
5.3    
5.5    
5.7    
6.0    
6.2    
6.4    
6.7    
6.9    
7.1    
7.4    
7.6    
7.8    
8.0    
8.3    
8.5    
8.7    
9.0    
9.2    
9.4    
9.7    
9.9    
10.1    
10.3    
10.6    
10.8    
11.0    
11.3    
11.5    
11.7    
12.0    
12.2    
12.4    
12.6    
12.9    
13.1    
13.3    
13.6    
13.8    
14.0    
14.3    
14.5    
14.7    
14.9    
15.2    
15.4    
15.6    
15.9    
16.1    
16.3    
16.6    
16.8    
17.0    
17.2    
17.5    
17.7    
17.9    
18.2    
18.4    
18.6    
18.9    
19.1    
19.3    
19.5    
19.8    
20.0    
20.2    
20.5    
20.7    
20.9    
21.1    
21.4    
21.6    
21.8    
22.1    
22.3    
22.5    
22.8    
23.0    
23.2    
23.4    
23.7    
23.9    
24.1    
24.4    
24.6    
24.8    
25.1    
25.3    
25.5    
25.7    
26.0    
26.2    
26.4    
26.7    
26.9    
27.1    
27.4    
27.6    
27.8    
28.0    
28.3    
28.5    
28.7    
29.0    
29.2    
29.4    
29.7    
29.9    
30.1    
30.3    
30.6    
30.8    
31.0    
31.3    
31.5    
31.7    
32.0    
32.2    
32.4    
32.6    
32.9    
33.1    
33.3    
33.6    
33.8    
34.0    
34.3    
34.5    
34.7    
34.9    
35.2    
35.4    
35.6    
35.9    
36.1    
36.3    
36.6    
36.8    
37.0    
37.2    
37.5    
37.7    
37.9    
38.2    
38.4    
38.6    
38.9    
39.1    
39.3    
39.5    
39.8    
40.0    
40.2    
40.5    
40.7    
40.9    
41.1    
41.4    
41.6    
41.8    
42.1    
42.3    
42.5    
42.8    
43.0    
43.2    
43.4    
43.7    
43.9    
44.1    
44.4    
44.6    
44.8    
45.1    
45.3    
45.5    
45.7    
46.0    
46.2    
46.4    
46.7    
46.9    
47.1    
47.4    
47.6    
47.8    
48.0    
48.3    
48.5    
48.7    
49.0    
49.2    
49.4    
49.7    
49.9    
50.1    
50.3    
50.6    
50.8    
51.0    
51.3    
51.5    
51.7    
52.0    
52.2    
52.4    
52.6    
52.9    
53.1    
53.3    
53.6    
53.8    
54.0    
54.3    
54.5    
54.7    
54.9    
55.2    
55.4    
55.6    
55.9    
56.1    
56.3    
56.6    
56.8    
57.0    
57.2    
57.5    
57.7    
57.9    
58.2    
58.4    
58.6    
58.9    
59.1    
59.3    
59.5    
59.8    
60.0    
60.2    
60.5    
60.7    
60.9    
61.1    
61.4    
61.6    
61.8    
62.1    
62.3    
62.5    
62.8    
63.0    
63.2    
63.4    
63.7    
63.9    
64.1    
64.4    
64.6    
64.8    
65.1    
65.3    
65.5    
65.7    
66.0    
66.2    
66.4    
66.7    
66.9    
67.1    
67.4    
67.6    
67.8    
68.0    
68.3    
68.5    
68.7    
69.0    
69.2    
69.4    
69.7    
69.9    
70.1    
70.3    
70.6    
70.8    
71.0    
71.3    
71.5    
71.7    
72.0    
72.2    
72.4    
72.6    
72.9    
73.1    
73.3    
73.6    
73.8    
74.0    
74.3    
74.5    
74.7    
74.9    
75.2    
75.4    
75.6    
75.9    
76.1    
76.3    
76.6    
76.8    
77.0    
77.2    
77.5    
77.7    
77.9    
78.2    
78.4    
78.6    
78.9    
79.1    
79.3    
79.5    
79.8    
80.0    
80.2    
80.5    
80.7    
80.9    
81.1    
81.4    
81.6    
81.8    
82.1    
82.3    
82.5    
82.8    
83.0    
83.2    
83.4    
83.7    
83.9    
84.1    
84.4    
84.6    
84.8    
85.1    
85.3    
85.5    
85.7    
86.0    
86.2    
86.4    
86.7    
86.9    
87.1    
87.4    
87.6    
87.8    
88.0    
88.3    
88.5    
88.7    
89.0    
89.2    
89.4    
89.7    
89.9    
90.1    
90.3    
90.6    
90.8    
91.0    
91.3    
91.5    
91.7    
92.0    
92.2    
92.4    
92.6    
92.9    
93.1    
93.3    
93.6    
93.8    
94.0    
94.3    
94.5    
94.7    
94.9    
95.2    
95.4    
95.6    
95.9    
96.1    
96.3    
96.6    
96.8    
97.0    
97.2    
97.5    
97.7    
97.9    
98.2    
98.4    
98.6    
98.9    
99.1    
99.3    
99.5    
99.8    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 72213, rend_intergenic: 64944  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77552, rend_intergenic: 74925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78604, rend_intergenic: 77831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89766, rend_intergenic: 85473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96833, rend_intergenic: 95085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99300, rend_intergenic: 97002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112055, rend_intergenic: 109235  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122727, rend_intergenic: 118499  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126532, rend_intergenic: 124614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132511, rend_intergenic: 129187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139465, rend_intergenic: 136623  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support