-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1898

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62885-T1
Valid prediction for GeneMark_model.109844_t
Couldn't classify 1411, 1499
Sorry, prediction snap_scaffold_1898-snap.1-T1 fails validation.
(ATG)	 AG	36-77	GT	AGG
(GAA)	 AG	678-1086	GT	AAG
(ATG)	 AG	1411-1499	GT	GGG
-recovered snap_scaffold_1898-snap.1-T1, initial, 36, 77
-recovered snap_scaffold_1898-snap.1-T1, initial, 1411, 1499
-recovered snap_scaffold_1898-snap.1-T1, internal, 36, 77
-recovered snap_scaffold_1898-snap.1-T1, internal, 678, 1086
-recovered snap_scaffold_1898-snap.1-T1, internal, 1411, 1499

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 183, 226
Couldn't classify 1504, 1587
Sorry, prediction Augustus_model.g41866.t1 fails validation.
(TTG)	 AG	183-226	GT	AGG
(ATG)	 AG	885-1071	GT	GGG
(GTG)	 AG	1504-1587	GT	AGG
add_exon() Sorry, Augustus_model.g41866.t1 885-1071-initial-1 is invalid.
-recovered Augustus_model.g41866.t1, initial, 885, 1071
-recovered Augustus_model.g41866.t1, internal, 183, 226
-recovered Augustus_model.g41866.t1, internal, 885, 1071
-recovered Augustus_model.g41866.t1, internal, 1504, 1587

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1797
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support