-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1896

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 741, 798
Couldn't classify 1538, 1581
Sorry, prediction GeneMark_model.109842_t fails validation.
(AGG)	 AG	741-798	GC	GAG
(AGA)	 AG	986-1044	GT	GAG
(GGG)	 AG	1158-1235	GT	AGG
(TGA)	 AG	1538-1581	GT	GGG
-recovered GeneMark_model.109842_t, internal, 741, 798
-recovered GeneMark_model.109842_t, internal, 986, 1044
-recovered GeneMark_model.109842_t, internal, 1158, 1235
-recovered GeneMark_model.109842_t, internal, 1538, 1581

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1803
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support