-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1895

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1895-snap.1-T1
add_exon() Sorry, snap_scaffold_1895-snap.1-T1 411-700-terminal-1 is invalid.
Couldn't classify 41, 71
Couldn't classify 1647, 1668
Sorry, prediction GeneMark_model.109841_t fails validation.
(CCC)	 AG	41-71	GT	AGG
(GGT)	 AG	502-672	GT	CGG
(GAG)	 AG	845-856	GT	GAG
(AGG)	 AG	881-961	GT	AGG
(GTG)	 AG	1006-1026	GT	AGG
(GGG)	 AG	1053-1112	GT	AGG
(GGG)	 AG	1140-1154	GT	AGG
(GAG)	 AG	1230-1375	GT	CTG
(CTG)	 AG	1406-1430	GT	CTG
(GAG)	 AG	1647-1668	GT	GCG
-recovered GeneMark_model.109841_t, internal, 41, 71
-recovered GeneMark_model.109841_t, internal, 502, 672
-recovered GeneMark_model.109841_t, internal, 845, 856
-recovered GeneMark_model.109841_t, internal, 881, 961
-recovered GeneMark_model.109841_t, internal, 1006, 1026
-recovered GeneMark_model.109841_t, internal, 1053, 1112
-recovered GeneMark_model.109841_t, internal, 1140, 1154
-recovered GeneMark_model.109841_t, internal, 1230, 1375
-recovered GeneMark_model.109841_t, internal, 1406, 1430
-recovered GeneMark_model.109841_t, internal, 1647, 1668
Valid prediction for GlimmerHMM_glimmerT_62884-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62884-T1 502-700-terminal-1 is invalid.
Couldn't classify 184, 283
Sorry, prediction Augustus_model.g41865.t1 fails validation.
(GTT)	 AG	184-283	GT	CAG
(TTG)	 AG	411-700	CT	GAC
-recovered Augustus_model.g41865.t1, terminal, 411, 700
-recovered Augustus_model.g41865.t1, internal, 184, 283

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1803
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support