-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1894

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1414, 1568
Sorry, prediction GlimmerHMM_glimmerT_62883-T1 fails validation.
(ATG)	 GC	584-643	GT	CGG
(GAG)	 AG	1414-1568	GT	AGG
-recovered GlimmerHMM_glimmerT_62883-T1, initial, 584, 643
-recovered GlimmerHMM_glimmerT_62883-T1, internal, 1414, 1568
Valid prediction for Augustus_model.g41864.t1
Couldn't classify 412, 423
Couldn't classify 1402, 1568
Sorry, prediction GeneMark_model.109840_t fails validation.
(AGA)	 AG	412-423	GT	AAG
(AAG)	 AG	465-479	GT	CAG
(AGA)	 AG	503-545	GT	GAG
(CCT)	 AG	1402-1568	GT	AGG
-recovered GeneMark_model.109840_t, internal, 412, 423
-recovered GeneMark_model.109840_t, internal, 465, 479
-recovered GeneMark_model.109840_t, internal, 503, 545
-recovered GeneMark_model.109840_t, internal, 1402, 1568

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1804
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support