-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1893

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 379, 457
Couldn't classify 1678, 1787
Sorry, prediction snap_scaffold_1893-snap.1-T1 fails validation.
(ACC)	 AG	379-457	GT	GGG
(CCT)	 AG	927-1097	GT	GGG
(GAA)	 AG	1559-1634	GT	ATG
(GAG)	 AG	1678-1787	GT	AAG
-recovered snap_scaffold_1893-snap.1-T1, internal, 379, 457
-recovered snap_scaffold_1893-snap.1-T1, internal, 927, 1097
-recovered snap_scaffold_1893-snap.1-T1, internal, 1559, 1634
-recovered snap_scaffold_1893-snap.1-T1, internal, 1678, 1787

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62882-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62882-T1 702-928-terminal-1 is invalid.
Couldn't classify 66, 150
Couldn't classify 1502, 1522
Sorry, prediction GeneMark_model.109839_t fails validation.
(GAC)	 AG	66-150	GT	CAG
(GAT)	 AG	360-419	GT	TGG
(GGG)	 AG	500-589	GT	AGG
(ACT)	 AG	659-829	GT	GTG
(GGA)	 AG	903-968	GT	AGG
(GGG)	 AG	997-1008	GT	TGG
(GAG)	 AG	1031-1186	GT	CCG
(GGT)	 AG	1251-1256	GT	GAG
(ATG)	 AG	1283-1291	GT	GGG
(AGA)	 AG	1317-1376	GT	TTG
(TCA)	 AG	1461-1478	GT	GGG
(AGG)	 AG	1502-1522	GT	AAG
-recovered GeneMark_model.109839_t, initial, 1283, 1291
-recovered GeneMark_model.109839_t, internal, 66, 150
-recovered GeneMark_model.109839_t, internal, 360, 419
-recovered GeneMark_model.109839_t, internal, 500, 589
-recovered GeneMark_model.109839_t, internal, 659, 829
-recovered GeneMark_model.109839_t, internal, 903, 968
-recovered GeneMark_model.109839_t, internal, 997, 1008
-recovered GeneMark_model.109839_t, internal, 1031, 1186
-recovered GeneMark_model.109839_t, internal, 1251, 1256
-recovered GeneMark_model.109839_t, internal, 1283, 1291
-recovered GeneMark_model.109839_t, internal, 1317, 1376
-recovered GeneMark_model.109839_t, internal, 1461, 1478
-recovered GeneMark_model.109839_t, internal, 1502, 1522

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1807
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support