-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1892

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1564, 1764
Sorry, prediction GeneMark_model.109838_t fails validation.
(ATG)	 AG	1130-1134	GT	AAG
(AGG)	 AG	1164-1202	GT	GAG
(AGA)	 AG	1229-1345	GT	AAG
(GAG)	 AG	1372-1410	GT	TGG
(GAG)	 AG	1444-1530	GT	TGG
(GAG)	 AG	1564-1764	GT	GAG
-recovered GeneMark_model.109838_t, initial, 1130, 1134
-recovered GeneMark_model.109838_t, terminal, 1164, 1202
-recovered GeneMark_model.109838_t, internal, 1130, 1134
-recovered GeneMark_model.109838_t, internal, 1164, 1202
-recovered GeneMark_model.109838_t, internal, 1229, 1345
-recovered GeneMark_model.109838_t, internal, 1372, 1410
-recovered GeneMark_model.109838_t, internal, 1444, 1530
-recovered GeneMark_model.109838_t, internal, 1564, 1764
Couldn't classify 717, 860
Sorry, prediction GeneMark_model.109837_t fails validation.
(GAC)	 AG	717-860	GT	TGG
(GAG)	 AG	894-905	GT	GAG
(TGA)	 AG	930-1095	GG	GAG
-recovered GeneMark_model.109837_t, terminal, 930, 1095
-recovered GeneMark_model.109837_t, internal, 717, 860
-recovered GeneMark_model.109837_t, internal, 894, 905

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1809
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support