-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1890

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 43, 63
Sorry, prediction GeneMark_model.109835_t fails validation.
(TAT)	 AG	43-63	GT	GGG
(GGG)	 AG	678-779	GT	GGG
(GGA)	 AG	806-829	GT	GAG
(GGA)	 AG	884-919	GT	GGG
(GGA)	 AG	940-1002	GT	GGG
(GGG)	 AG	1026-1167	GC	GAG
-recovered GeneMark_model.109835_t, terminal, 1026, 1167
-recovered GeneMark_model.109835_t, internal, 43, 63
-recovered GeneMark_model.109835_t, internal, 678, 779
-recovered GeneMark_model.109835_t, internal, 806, 829
-recovered GeneMark_model.109835_t, internal, 884, 919
-recovered GeneMark_model.109835_t, internal, 940, 1002
-recovered GeneMark_model.109835_t, internal, 1026, 1167

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1811
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support