-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1888

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62881-T1
Valid prediction for snap_scaffold_1888-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1651, 1714
Sorry, prediction Augustus_model.g41863.t1 fails validation.
(ATG)	 GC	420-422	GT	TGG
(CGA)	 AG	689-794	GT	AAG
(GCA)	 AG	1385-1462	GT	CGG
(ACT)	 AG	1651-1714	GT	AGG
-recovered Augustus_model.g41863.t1, initial, 420, 422
-recovered Augustus_model.g41863.t1, internal, 689, 794
-recovered Augustus_model.g41863.t1, internal, 1385, 1462
-recovered Augustus_model.g41863.t1, internal, 1651, 1714
Couldn't classify 673, 794
Sorry, prediction GeneMark_model.109834_t fails validation.
(GGC)	 AG	673-794	GT	AAG
(AGA)	 AG	820-858	GT	GAG
(AGA)	 AG	884-946	GT	CTG
(AGT)	 AG	1490-1498	GT	GAG
(GGC)	 AG	1520-1526	GG	GAG
-recovered GeneMark_model.109834_t, terminal, 1520, 1526
-recovered GeneMark_model.109834_t, internal, 673, 794
-recovered GeneMark_model.109834_t, internal, 820, 858
-recovered GeneMark_model.109834_t, internal, 884, 946
-recovered GeneMark_model.109834_t, internal, 1490, 1498
Couldn't classify 1385, 1462
Sorry, prediction snap_scaffold_1888-snap.2-T1 fails validation.
(ATG)	 AA	317-343	GT	ACG
(CGA)	 AG	689-794	GT	AAG
(GCA)	 AG	1385-1462	GT	CGG
-recovered snap_scaffold_1888-snap.2-T1, initial, 317, 343
-recovered snap_scaffold_1888-snap.2-T1, internal, 689, 794
-recovered snap_scaffold_1888-snap.2-T1, internal, 1385, 1462

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1812
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support