-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1885

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1063, 1086
Couldn't classify 1644, 1682
Sorry, prediction GeneMark_model.109830_t fails validation.
(ACA)	 AG	1063-1086	GT	GGG
(GGG)	 AG	1125-1179	GT	AAG
(GAC)	 AG	1351-1376	GT	GTG
(AGA)	 AG	1509-1535	GT	AAG
(AGA)	 AG	1644-1682	GC	GAG
-recovered GeneMark_model.109830_t, internal, 1063, 1086
-recovered GeneMark_model.109830_t, internal, 1125, 1179
-recovered GeneMark_model.109830_t, internal, 1351, 1376
-recovered GeneMark_model.109830_t, internal, 1509, 1535
-recovered GeneMark_model.109830_t, internal, 1644, 1682

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1814
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support