-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1884

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 418, 518
Couldn't classify 1525, 1727
Sorry, prediction snap_scaffold_1884-snap.1-T1 fails validation.
(AGG)	 AG	418-518	GT	AGG
(TCG)	 AG	774-874	GT	AGG
(GTT)	 AG	1264-1408	GT	AGG
(GGC)	 AG	1525-1727	GT	GGG
-recovered snap_scaffold_1884-snap.1-T1, internal, 418, 518
-recovered snap_scaffold_1884-snap.1-T1, internal, 774, 874
-recovered snap_scaffold_1884-snap.1-T1, internal, 1264, 1408
-recovered snap_scaffold_1884-snap.1-T1, internal, 1525, 1727
Couldn't classify 418, 518
Couldn't classify 1525, 1714
Sorry, prediction Augustus_model.g41861.t1 fails validation.
(AGG)	 AG	418-518	GT	AGG
(TCG)	 AG	774-874	GT	AGG
(GTT)	 AG	1264-1408	GT	AGG
(GGC)	 AG	1525-1714	GT	TGG
-recovered Augustus_model.g41861.t1, internal, 418, 518
-recovered Augustus_model.g41861.t1, internal, 774, 874
-recovered Augustus_model.g41861.t1, internal, 1264, 1408
-recovered Augustus_model.g41861.t1, internal, 1525, 1714
Couldn't classify 418, 518
Sorry, prediction GlimmerHMM_glimmerT_62878-T1 fails validation.
(AGG)	 AG	418-518	GT	AGG
(TCG)	 AG	774-874	GT	AGG
(GTT)	 AG	904-1651	AC	GAA
-recovered GlimmerHMM_glimmerT_62878-T1, terminal, 904, 1651
-recovered GlimmerHMM_glimmerT_62878-T1, internal, 418, 518
-recovered GlimmerHMM_glimmerT_62878-T1, internal, 774, 874
Couldn't classify 418, 518
Couldn't classify 1525, 1714
Sorry, prediction GeneMark_model.109829_t fails validation.
(AGG)	 AG	418-518	GT	AGG
(TCG)	 AG	774-874	GT	AGG
(GTT)	 AG	1264-1408	GT	AGG
(GGC)	 AG	1525-1714	GT	TGG
-recovered GeneMark_model.109829_t, internal, 418, 518
-recovered GeneMark_model.109829_t, internal, 774, 874
-recovered GeneMark_model.109829_t, internal, 1264, 1408
-recovered GeneMark_model.109829_t, internal, 1525, 1714

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1816
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support