-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1883

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 41, 103
Sorry, prediction GeneMark_model.109828_t fails validation.
(TAA)	 AG	41-103	GT	AAG
(GGG)	 AG	868-939	GT	GAG
(AAG)	 AG	972-980	GT	AGG
(GAG)	 AG	1015-1041	GT	GAG
(GGG)	 AG	1067-1093	GT	AGG
(AGA)	 AG	1120-1170	GT	GGG
(GTG)	 AG	1208-1213	GT	AGG
(GGG)	 AG	1254-1283	GT	AAG
(AGG)	 AG	1306-1344	GT	CGG
(GAG)	 AG	1373-1436	TT	AGT
-recovered GeneMark_model.109828_t, terminal, 1373, 1436
-recovered GeneMark_model.109828_t, internal, 41, 103
-recovered GeneMark_model.109828_t, internal, 868, 939
-recovered GeneMark_model.109828_t, internal, 972, 980
-recovered GeneMark_model.109828_t, internal, 1015, 1041
-recovered GeneMark_model.109828_t, internal, 1067, 1093
-recovered GeneMark_model.109828_t, internal, 1120, 1170
-recovered GeneMark_model.109828_t, internal, 1208, 1213
-recovered GeneMark_model.109828_t, internal, 1254, 1283
-recovered GeneMark_model.109828_t, internal, 1306, 1344
Valid prediction for snap_scaffold_1883-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1818
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support