-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1881

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 343, 389
Couldn't classify 526, 622
Sorry, prediction CodingQuarry_transcript_23893-T1 fails validation.
(ATG)	 AG	343-389	GA	GAG
(GAT)	 GG	526-622	AG	GAA
Couldn't classify 38, 133
Sorry, prediction GeneMark_model.109826_t fails validation.
(AGG)	 AG	38-133	GT	GAG
(ACA)	 AG	207-239	GT	GAG
(AGG)	 AG	365-445	GC	GGG
(GGC)	 AG	467-577	GC	GGG
(GGC)	 AG	599-638	GA	GAG
-recovered GeneMark_model.109826_t, terminal, 599, 638
-recovered GeneMark_model.109826_t, internal, 38, 133
-recovered GeneMark_model.109826_t, internal, 207, 239
-recovered GeneMark_model.109826_t, internal, 365, 445
-recovered GeneMark_model.109826_t, internal, 467, 577

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1819
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support