-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1880

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 19, 412
Sorry, prediction GeneMark_model.109825_t fails validation.
(TCT)	 AG	19-412	GT	AGG
(ATG)	 AG	673-690	GA	GAG
-recovered GeneMark_model.109825_t, terminal, 673, 690
-recovered GeneMark_model.109825_t, internal, 19, 412
Couldn't classify 673, 693
Sorry, prediction snap_scaffold_1880-snap.1-T1 fails validation.
(ATG)	 TA	8-404	GT	GGG
(ATG)	 AG	673-693	GT	AGG
-recovered snap_scaffold_1880-snap.1-T1, initial, 8, 404
add_exon() Sorry, snap_scaffold_1880-snap.1-T1 673-693-initial-1 is invalid.
-recovered snap_scaffold_1880-snap.1-T1, initial, 673, 693
-recovered snap_scaffold_1880-snap.1-T1, internal, 673, 693

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1820
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support