-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_188

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 312, 460
Sorry, prediction GeneMark_model.106877_t fails validation.
(CTG)	 AG	312-460	GT	ACG
(GCC)	 AG	842-1088	GT	AGG
(ACC)	 AG	1131-1205	GT	AGG
(CCT)	 AG	1398-1414	GT	AGG
(GAC)	 AG	1726-1827	GT	AGG
(AGG)	 AG	1848-1976	GT	GAG
(ACA)	 AG	2825-2833	GT	GAG
(CGT)	 AG	2859-2880	GT	GAG
(GGC)	 AG	3406-3620	GT	AGG
(GAC)	 AG	3655-3717	GT	GTG
(GAG)	 AG	3976-4029	GT	GGG
(GGA)	 AG	4140-4190	GT	AAG
(GCC)	 AG	4214-4243	GT	GAG
(ACG)	 AG	4800-4850	GT	CTG
(AGG)	 AG	4941-4973	GT	CAG
(AGA)	 AG	4996-5073	GT	GCG
(GAG)	 AG	5094-5192	GT	GAG
(AGG)	 AG	5216-5309	GT	GGG
(TAC)	 AG	5925-5959	GT	AGG
(GGT)	 AG	5995-6013	GT	TTG
(CAG)	 AG	6037-6078	GT	AGG
(GAG)	 AG	6203-6217	AA	AGA
-recovered GeneMark_model.106877_t, terminal, 6203, 6217
-recovered GeneMark_model.106877_t, internal, 312, 460
-recovered GeneMark_model.106877_t, internal, 842, 1088
-recovered GeneMark_model.106877_t, internal, 1131, 1205
-recovered GeneMark_model.106877_t, internal, 1398, 1414
-recovered GeneMark_model.106877_t, internal, 1726, 1827
-recovered GeneMark_model.106877_t, internal, 1848, 1976
-recovered GeneMark_model.106877_t, internal, 2825, 2833
-recovered GeneMark_model.106877_t, internal, 2859, 2880
-recovered GeneMark_model.106877_t, internal, 3406, 3620
-recovered GeneMark_model.106877_t, internal, 3655, 3717
-recovered GeneMark_model.106877_t, internal, 3976, 4029
-recovered GeneMark_model.106877_t, internal, 4140, 4190
-recovered GeneMark_model.106877_t, internal, 4214, 4243
-recovered GeneMark_model.106877_t, internal, 4800, 4850
-recovered GeneMark_model.106877_t, internal, 4941, 4973
-recovered GeneMark_model.106877_t, internal, 4996, 5073
-recovered GeneMark_model.106877_t, internal, 5094, 5192
-recovered GeneMark_model.106877_t, internal, 5216, 5309
-recovered GeneMark_model.106877_t, internal, 5925, 5959
-recovered GeneMark_model.106877_t, internal, 5995, 6013
-recovered GeneMark_model.106877_t, internal, 6037, 6078
Valid prediction for snap_scaffold_188-snap.2-T1
add_exon() Sorry, snap_scaffold_188-snap.2-T1 704-1065-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 9588, 9745
Sorry, prediction snap_scaffold_188-snap.1-T1 fails validation.
(ATG)	 AA	4606-4625	GT	AGG
(TGA)	 AG	6527-6664	GT	CAG
(CCT)	 AG	9588-9745	GT	AAG
-recovered snap_scaffold_188-snap.1-T1, initial, 4606, 4625
-recovered snap_scaffold_188-snap.1-T1, internal, 6527, 6664
-recovered snap_scaffold_188-snap.1-T1, internal, 9588, 9745
Valid prediction for GlimmerHMM_glimmerT_61472-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5405, rend_intergenic: 704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 10010
-exon list size: 49


building trellis

2.0    
3.9    
5.9    
7.8    
9.8    
11.8    
13.7    
15.7    
17.6    
19.6    
21.6    
23.5    
25.5    
27.5    
29.4    
31.4    
33.3    
35.3    
37.3    
39.2    
41.2    
43.1    
45.1    
47.1    
49.0    
51.0    
52.9    
54.9    
56.9    
58.8    
60.8    
62.7    
64.7    
66.7    
68.6    
70.6    
72.5    
74.5    
76.5    
78.4    
80.4    
82.4    
84.3    
86.3    
88.2    
90.2    
92.2    
94.1    
96.1    
98.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5405, rend_intergenic: 704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support