-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1879

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62876-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62876-T1 167-345-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 617, 727
Couldn't classify 1715, 1762
Sorry, prediction GeneMark_model.109824_t fails validation.
(GGA)	 AG	617-727	GT	GAG
(GAG)	 AG	752-763	GT	GAG
(GGG)	 AG	785-808	GT	GAG
(GAG)	 AG	842-859	GT	GAG
(AGC)	 AG	1521-1694	GT	AGG
(GTA)	 AG	1715-1762	GT	AGG
-recovered GeneMark_model.109824_t, internal, 617, 727
-recovered GeneMark_model.109824_t, internal, 752, 763
-recovered GeneMark_model.109824_t, internal, 785, 808
-recovered GeneMark_model.109824_t, internal, 842, 859
-recovered GeneMark_model.109824_t, internal, 1521, 1694
-recovered GeneMark_model.109824_t, internal, 1715, 1762

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1821
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support