-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1876

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1558, 1700
Sorry, prediction GeneMark_model.109822_t fails validation.
(ATG)	 AT	1208-1212	GT	ACG
(CAC)	 AG	1478-1519	GT	GAG
(AGA)	 AG	1558-1700	GT	GGG
-recovered GeneMark_model.109822_t, initial, 1208, 1212
-recovered GeneMark_model.109822_t, internal, 1478, 1519
-recovered GeneMark_model.109822_t, internal, 1558, 1700

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1722, 1814
Sorry, prediction GeneMark_model.109821_t fails validation.
(ATG)	 GG	1264-1295	GT	ACG
(GAA)	 AG	1379-1384	GT	CTG
(AGG)	 AG	1541-1552	GT	AGG
(ACA)	 AG	1575-1601	GT	AGG
(GGC)	 AG	1648-1695	GT	AGG
(GAT)	 AG	1722-1814	GC	GGG
-recovered GeneMark_model.109821_t, initial, 1264, 1295
-recovered GeneMark_model.109821_t, terminal, 1541, 1552
-recovered GeneMark_model.109821_t, terminal, 1648, 1695
-recovered GeneMark_model.109821_t, internal, 1379, 1384
-recovered GeneMark_model.109821_t, internal, 1541, 1552
-recovered GeneMark_model.109821_t, internal, 1575, 1601
-recovered GeneMark_model.109821_t, internal, 1648, 1695
-recovered GeneMark_model.109821_t, internal, 1722, 1814
Couldn't classify 1511, 1601
Sorry, prediction snap_scaffold_1876-snap.1-T1 fails validation.
(CCT)	 AG	1511-1601	GT	AGG
(GGC)	 AG	1661-1774	GT	AGG
add_exon() Sorry, snap_scaffold_1876-snap.1-T1 1661-1774-terminal-1 is invalid.
-recovered snap_scaffold_1876-snap.1-T1, terminal, 1661, 1774
-recovered snap_scaffold_1876-snap.1-T1, internal, 1511, 1601
-recovered snap_scaffold_1876-snap.1-T1, internal, 1661, 1774

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1823
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support