-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1875

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1491, 1703
Sorry, prediction snap_scaffold_1875-snap.2-T1 fails validation.
(ACA)	 AG	1491-1703	GT	AGG
-recovered snap_scaffold_1875-snap.2-T1, internal, 1491, 1703
Couldn't classify 979, 1043
Couldn't classify 1491, 1723
Sorry, prediction GeneMark_model.109820_t fails validation.
(AGA)	 AG	979-1043	GT	CTG
(ACA)	 AG	1491-1723	GT	AGG
-recovered GeneMark_model.109820_t, internal, 979, 1043
-recovered GeneMark_model.109820_t, internal, 1491, 1723
Couldn't classify 979, 1043
Couldn't classify 1491, 1683
Sorry, prediction Augustus_model.g41859.t1 fails validation.
(AGA)	 AG	979-1043	GT	CTG
(ACA)	 AG	1491-1683	GT	AGG
-recovered Augustus_model.g41859.t1, internal, 979, 1043
-recovered Augustus_model.g41859.t1, internal, 1491, 1683
Valid prediction for GlimmerHMM_glimmerT_62875-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1875-snap.1-T1
add_exon() Sorry, snap_scaffold_1875-snap.1-T1 784-974-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1824
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support