-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1874

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 409, 519
Couldn't classify 1005, 1116
Sorry, prediction snap_scaffold_1874-snap.1-T1 fails validation.
(GCG)	 AG	409-519	GT	AGG
(GCC)	 AG	668-859	GT	GAG
(GAG)	 AG	1005-1116	GT	GCG
-recovered snap_scaffold_1874-snap.1-T1, internal, 409, 519
-recovered snap_scaffold_1874-snap.1-T1, internal, 668, 859
-recovered snap_scaffold_1874-snap.1-T1, internal, 1005, 1116
Couldn't classify 116, 158
Couldn't classify 1654, 1725
Sorry, prediction GeneMark_model.109819_t fails validation.
(ACC)	 AG	116-158	GT	GAG
(GGG)	 AG	693-704	GT	GAG
(GGG)	 AG	727-738	GT	GAG
(GGG)	 AG	761-772	GT	GAG
(GGG)	 AG	796-825	GT	GAG
(GGG)	 AG	848-859	GT	GAG
(GGG)	 AG	882-893	GT	GAG
(GGG)	 AG	916-927	GT	GAG
(GGG)	 AG	950-1015	GT	AGG
(ACG)	 AG	1654-1725	GT	TCG
-recovered GeneMark_model.109819_t, terminal, 116, 158
-recovered GeneMark_model.109819_t, internal, 116, 158
-recovered GeneMark_model.109819_t, internal, 693, 704
-recovered GeneMark_model.109819_t, internal, 727, 738
-recovered GeneMark_model.109819_t, internal, 761, 772
-recovered GeneMark_model.109819_t, internal, 796, 825
-recovered GeneMark_model.109819_t, internal, 848, 859
-recovered GeneMark_model.109819_t, internal, 882, 893
-recovered GeneMark_model.109819_t, internal, 916, 927
-recovered GeneMark_model.109819_t, internal, 950, 1015
-recovered GeneMark_model.109819_t, internal, 1654, 1725
Valid prediction for GlimmerHMM_glimmerT_62874-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1824
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support