-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1873

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 558, 565
Couldn't classify 1705, 1816
Sorry, prediction GeneMark_model.109818_t fails validation.
(AGG)	 AG	558-565	GT	AGG
(GGA)	 AG	670-696	GT	GAG
(ATG)	 AG	720-785	GT	AGG
(GGA)	 AG	1242-1271	GT	AGG
(GGA)	 AG	1318-1329	GT	AGG
(GGA)	 AG	1358-1372	GT	GGG
(AGG)	 AG	1397-1480	GT	AGG
(ACA)	 AG	1507-1536	GT	AGG
(ACA)	 AG	1563-1592	GT	AGG
(TGG)	 AG	1625-1681	GT	TTG
(ACA)	 AG	1705-1816	GT	AGG
-recovered GeneMark_model.109818_t, initial, 720, 785
-recovered GeneMark_model.109818_t, internal, 558, 565
-recovered GeneMark_model.109818_t, internal, 670, 696
-recovered GeneMark_model.109818_t, internal, 720, 785
-recovered GeneMark_model.109818_t, internal, 1242, 1271
-recovered GeneMark_model.109818_t, internal, 1318, 1329
-recovered GeneMark_model.109818_t, internal, 1358, 1372
-recovered GeneMark_model.109818_t, internal, 1397, 1480
-recovered GeneMark_model.109818_t, internal, 1507, 1536
-recovered GeneMark_model.109818_t, internal, 1563, 1592
-recovered GeneMark_model.109818_t, internal, 1625, 1681
-recovered GeneMark_model.109818_t, internal, 1705, 1816

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1824
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support