-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1870

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1695, 1722
Sorry, prediction GeneMark_model.109817_t fails validation.
(ATG)	 AC	1433-1503	GT	GAG
(AGA)	 AG	1527-1565	GT	GGG
(GAG)	 AG	1616-1669	GT	GTG
(AGA)	 AG	1695-1722	GT	CAG
-recovered GeneMark_model.109817_t, initial, 1433, 1503
-recovered GeneMark_model.109817_t, internal, 1527, 1565
-recovered GeneMark_model.109817_t, internal, 1616, 1669
-recovered GeneMark_model.109817_t, internal, 1695, 1722
Valid prediction for snap_scaffold_1870-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_62873-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1110, 1279
Sorry, prediction GeneMark_model.109816_t fails validation.
(ATG)	 AG	511-527	GT	GGG
(AGG)	 AG	561-599	GT	GAG
(AGG)	 AG	627-635	GT	CGG
(GGA)	 AG	675-680	GT	ATG
(GGG)	 AG	705-740	GT	GGG
(GAG)	 AG	762-807	GT	GAG
(GTC)	 AG	1110-1279	GT	AGG
-recovered GeneMark_model.109816_t, initial, 511, 527
-recovered GeneMark_model.109816_t, internal, 511, 527
-recovered GeneMark_model.109816_t, internal, 561, 599
-recovered GeneMark_model.109816_t, internal, 627, 635
-recovered GeneMark_model.109816_t, internal, 675, 680
-recovered GeneMark_model.109816_t, internal, 705, 740
-recovered GeneMark_model.109816_t, internal, 762, 807
-recovered GeneMark_model.109816_t, internal, 1110, 1279

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1833
-exon list size: 31


building trellis

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60.6    
63.6    
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72.7    
75.8    
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81.8    
84.8    
87.9    
90.9    
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97.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support