-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_187

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9750, 9906
Sorry, prediction snap_scaffold_187-snap.3-T1 fails validation.
(ATG)	 AA	4912-4997	GT	AGG
(ATA)	 AG	5089-5171	GT	ATG
(GGT)	 AG	9168-9223	GT	GGG
(AAA)	 AG	9537-9619	GT	AGG
(AAA)	 AG	9750-9906	GT	GGG
-recovered snap_scaffold_187-snap.3-T1, initial, 4912, 4997
-recovered snap_scaffold_187-snap.3-T1, internal, 5089, 5171
-recovered snap_scaffold_187-snap.3-T1, internal, 9168, 9223
-recovered snap_scaffold_187-snap.3-T1, internal, 9537, 9619
-recovered snap_scaffold_187-snap.3-T1, internal, 9750, 9906
Valid prediction for GlimmerHMM_glimmerT_61471-T1
Couldn't classify 36, 48
Sorry, prediction GeneMark_model.106873_t fails validation.
(GGT)	 AG	36-48	GT	GGG
(ACA)	 AG	383-434	GT	GTG
(GTT)	 AG	888-903	GT	CTG
(GGA)	 AG	993-1131	CA	AAC
-recovered GeneMark_model.106873_t, terminal, 993, 1131
-recovered GeneMark_model.106873_t, internal, 36, 48
-recovered GeneMark_model.106873_t, internal, 383, 434
-recovered GeneMark_model.106873_t, internal, 888, 903
Valid prediction for snap_scaffold_187-snap.2-T1
Valid prediction for GeneMark_model.106875_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 8805, 8910
Sorry, prediction snap_scaffold_187-snap.1-T1 fails validation.
(ATG)	 GG	6010-6140	GT	GGG
(CGT)	 AG	8181-8303	GT	CTG
(ACA)	 AG	8805-8910	GT	TGG
-recovered snap_scaffold_187-snap.1-T1, initial, 6010, 6140
-recovered snap_scaffold_187-snap.1-T1, internal, 8181, 8303
-recovered snap_scaffold_187-snap.1-T1, internal, 8805, 8910
Valid prediction for GeneMark_model.106876_t
add_exon() Sorry, GeneMark_model.106876_t 253-524-terminal-1 is invalid.
Valid prediction for GeneMark_model.106874_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4047, rend_intergenic: 1214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 10056
-exon list size: 39


building trellis

2.4    
4.9    
7.3    
9.8    
12.2    
14.6    
17.1    
19.5    
22.0    
24.4    
26.8    
29.3    
31.7    
34.1    
36.6    
39.0    
41.5    
43.9    
46.3    
48.8    
51.2    
53.7    
56.1    
58.5    
61.0    
63.4    
65.9    
68.3    
70.7    
73.2    
75.6    
78.0    
80.5    
82.9    
85.4    
87.8    
90.2    
92.7    
95.1    
97.6    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4047, rend_intergenic: 1214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support