-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1869

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41857.t1
add_exon() Sorry, Augustus_model.g41857.t1 155-324-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41858.t1
add_exon() Sorry, Augustus_model.g41858.t1 318-535-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62872-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62872-T1 318-535-terminal-1 is invalid.
Valid prediction for snap_scaffold_1869-snap.1-T1
Valid prediction for snap_scaffold_1869-snap.2-T1
add_exon() Sorry, snap_scaffold_1869-snap.2-T1 318-535-terminal-1 is invalid.
Couldn't classify 318, 531
Sorry, prediction GeneMark_model.109815_t fails validation.
(AGG)	 AG	318-531	GT	TCG
(GGC)	 AG	564-578	GT	GGG
(AGG)	 AG	1173-1178	GC	GAG
(GGA)	 AG	1210-1230	GT	AGG
(AGG)	 AG	1255-1282	AT	AAA
-recovered GeneMark_model.109815_t, terminal, 1255, 1282
-recovered GeneMark_model.109815_t, internal, 318, 531
-recovered GeneMark_model.109815_t, internal, 564, 578
-recovered GeneMark_model.109815_t, internal, 1173, 1178
-recovered GeneMark_model.109815_t, internal, 1210, 1230

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1834
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support