-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1868

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 184, 474
Sorry, prediction snap_scaffold_1868-snap.1-T1 fails validation.
(GTG)	 AG	184-474	GT	CGG
-recovered snap_scaffold_1868-snap.1-T1, internal, 184, 474
Valid prediction for GlimmerHMM_glimmerT_62871-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 851, 1051
Sorry, prediction GeneMark_model.109814_t fails validation.
(GGA)	 AG	851-1051	GT	GAG
(AGT)	 AG	1126-1182	GT	GTG
(AGA)	 AG	1212-1220	GT	GAG
(AGA)	 AG	1242-1317	GT	TGG
(GAG)	 AG	1351-1370	GT	CAG
(ACA)	 AG	1395-1614	GC	GAG
-recovered GeneMark_model.109814_t, terminal, 1395, 1614
-recovered GeneMark_model.109814_t, internal, 851, 1051
-recovered GeneMark_model.109814_t, internal, 1126, 1182
-recovered GeneMark_model.109814_t, internal, 1212, 1220
-recovered GeneMark_model.109814_t, internal, 1242, 1317
-recovered GeneMark_model.109814_t, internal, 1351, 1370
-recovered GeneMark_model.109814_t, internal, 1395, 1614

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1837
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support