-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1867

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 394, 533
Couldn't classify 1637, 1811
Sorry, prediction snap_scaffold_1867-snap.1-T1 fails validation.
(GAA)	 AG	394-533	GT	GTG
(GAT)	 AG	1637-1811	GT	GGG
-recovered snap_scaffold_1867-snap.1-T1, internal, 394, 533
-recovered snap_scaffold_1867-snap.1-T1, internal, 1637, 1811

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 52, 222
Couldn't classify 1358, 1426
Sorry, prediction pasa_asmbl_21174.p1 fails validation.
(GAG)	 AG	52-222	GT	AGG
(GAC)	 AG	382-415	GT	AGG
(TGC)	 AG	709-788	GT	AGG
(GCC)	 AG	1358-1426	GT	AGG
-recovered pasa_asmbl_21174.p1, internal, 52, 222
-recovered pasa_asmbl_21174.p1, internal, 382, 415
-recovered pasa_asmbl_21174.p1, internal, 709, 788
-recovered pasa_asmbl_21174.p1, internal, 1358, 1426
Couldn't classify 52, 222
Couldn't classify 1358, 1426
Sorry, prediction snap_scaffold_1867-snap.2-T1 fails validation.
(GAG)	 AG	52-222	GT	AGG
(GAC)	 AG	382-415	GT	AGG
(TGC)	 AG	709-788	GT	AGG
(GCC)	 AG	1358-1426	GT	AGG
-recovered snap_scaffold_1867-snap.2-T1, internal, 52, 222
-recovered snap_scaffold_1867-snap.2-T1, internal, 382, 415
-recovered snap_scaffold_1867-snap.2-T1, internal, 709, 788
-recovered snap_scaffold_1867-snap.2-T1, internal, 1358, 1426
Valid prediction for GlimmerHMM_glimmerT_62870-T1
Couldn't classify 1, 222
Sorry, prediction HiQ_model.g41856.t1 fails validation.
(CCT)	 GT	1-222	GT	AGG
(GAC)	 AG	382-415	GT	AGG
(TGC)	 AG	709-788	GT	AGG
(GCC)	 AG	1358-1468	GC	GAG
-recovered HiQ_model.g41856.t1, terminal, 1358, 1468
-recovered HiQ_model.g41856.t1, internal, 382, 415
-recovered HiQ_model.g41856.t1, internal, 709, 788
-recovered HiQ_model.g41856.t1, internal, 1358, 1468
Couldn't classify 52, 222
Couldn't classify 1493, 1512
Sorry, prediction GeneMark_model.109813_t fails validation.
(GAG)	 AG	52-222	GT	AGG
(GAC)	 AG	382-415	GT	AGG
(TGC)	 AG	709-788	GT	AGG
(GCC)	 AG	1358-1464	GT	GAG
(TGA)	 AG	1493-1512	GT	GAG
-recovered GeneMark_model.109813_t, internal, 52, 222
-recovered GeneMark_model.109813_t, internal, 382, 415
-recovered GeneMark_model.109813_t, internal, 709, 788
-recovered GeneMark_model.109813_t, internal, 1358, 1464
-recovered GeneMark_model.109813_t, internal, 1493, 1512

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1811, rend_intergenic: 412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1837
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1811, rend_intergenic: 412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support