-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1864

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 33, 74
Sorry, prediction GeneMark_model.109809_t fails validation.
(GGG)	 AG	33-74	GT	CCG
(AGC)	 AG	159-332	GT	GGG
(GGA)	 AG	963-1073	GT	AAG
(AGG)	 AG	1412-1495	GT	GAG
(GAG)	 AG	1520-1540	GT	GGG
(GAG)	 AG	1567-1599	GT	GGG
(GCC)	 AG	1621-1627	GT	AGG
-recovered GeneMark_model.109809_t, terminal, 1621, 1627
-recovered GeneMark_model.109809_t, internal, 33, 74
-recovered GeneMark_model.109809_t, internal, 159, 332
-recovered GeneMark_model.109809_t, internal, 963, 1073
-recovered GeneMark_model.109809_t, internal, 1412, 1495
-recovered GeneMark_model.109809_t, internal, 1520, 1540
-recovered GeneMark_model.109809_t, internal, 1567, 1599
-recovered GeneMark_model.109809_t, internal, 1621, 1627
Couldn't classify 255, 338
Sorry, prediction snap_scaffold_1864-snap.1-T1 fails validation.
(GCG)	 AG	255-338	GT	CAG
(AGA)	 AG	1406-1627	GT	AGG
-recovered snap_scaffold_1864-snap.1-T1, terminal, 1406, 1627
-recovered snap_scaffold_1864-snap.1-T1, internal, 255, 338
-recovered snap_scaffold_1864-snap.1-T1, internal, 1406, 1627

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1843
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support