-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1862

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 151, 186
Sorry, prediction GeneMark_model.109807_t fails validation.
(AGA)	 AG	151-186	GT	GTG
(AGA)	 AG	232-243	GT	GGG
(AGA)	 AG	293-370	GT	GTG
(GAT)	 AG	399-410	GT	CTG
(AGA)	 AG	435-470	GT	GTG
(AGA)	 AG	495-506	GT	GGG
(AGA)	 AG	575-610	GT	GTG
(AGA)	 AG	635-670	GT	GTG
(AGA)	 AG	715-771	GT	GTG
(AGA)	 AG	796-831	GT	GTG
(GAT)	 AG	880-891	GT	GTG
(GAT)	 AG	1080-1112	GT	GTG
(AGA)	 AG	1137-1166	GT	GAG
(AGA)	 AG	1198-1233	GT	GTG
(ACA)	 AG	1352-1399	GT	GTG
(GGA)	 AG	1424-1538	GG	AAG
add_exon() Sorry, GeneMark_model.109807_t 1137-1166-terminal-1 is invalid.
-recovered GeneMark_model.109807_t, terminal, 1137, 1166
-recovered GeneMark_model.109807_t, terminal, 1424, 1538
-recovered GeneMark_model.109807_t, internal, 151, 186
-recovered GeneMark_model.109807_t, internal, 232, 243
-recovered GeneMark_model.109807_t, internal, 293, 370
-recovered GeneMark_model.109807_t, internal, 399, 410
-recovered GeneMark_model.109807_t, internal, 435, 470
-recovered GeneMark_model.109807_t, internal, 495, 506
-recovered GeneMark_model.109807_t, internal, 575, 610
-recovered GeneMark_model.109807_t, internal, 635, 670
-recovered GeneMark_model.109807_t, internal, 715, 771
-recovered GeneMark_model.109807_t, internal, 796, 831
-recovered GeneMark_model.109807_t, internal, 880, 891
-recovered GeneMark_model.109807_t, internal, 1080, 1112
-recovered GeneMark_model.109807_t, internal, 1137, 1166
-recovered GeneMark_model.109807_t, internal, 1198, 1233
-recovered GeneMark_model.109807_t, internal, 1352, 1399

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1845
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support