-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1860

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 701, 895
Sorry, prediction snap_scaffold_1860-snap.1-T1 fails validation.
(AAT)	 AG	701-895	GT	AGG
-recovered snap_scaffold_1860-snap.1-T1, internal, 701, 895
Couldn't classify 50, 55
Sorry, prediction GeneMark_model.109805_t fails validation.
(AGG)	 AG	50-55	GT	GAG
(CAC)	 AG	81-107	GT	ACG
(AAG)	 AG	801-830	GT	AGG
(AAG)	 AG	866-895	GT	AGG
(GGG)	 AG	1293-1371	GA	GAG
-recovered GeneMark_model.109805_t, terminal, 1293, 1371
-recovered GeneMark_model.109805_t, internal, 50, 55
-recovered GeneMark_model.109805_t, internal, 81, 107
-recovered GeneMark_model.109805_t, internal, 801, 830
-recovered GeneMark_model.109805_t, internal, 866, 895

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62867-T1
Couldn't classify 206, 266
Sorry, prediction GeneMark_model.109806_t fails validation.
(GGG)	 AG	206-266	GT	GGG
(GAG)	 AG	290-304	GT	AGG
(GAG)	 AG	366-413	GA	GAG
-recovered GeneMark_model.109806_t, terminal, 366, 413
-recovered GeneMark_model.109806_t, internal, 206, 266
-recovered GeneMark_model.109806_t, internal, 290, 304

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1848
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support