-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_186

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9875, 9969
Sorry, prediction snap_scaffold_186-snap.2-T1 fails validation.
(ATG)	 AC	8878-8932	GT	AGG
(AGA)	 AG	9699-9733	GT	TGG
(GGG)	 AG	9875-9969	GT	CGG
-recovered snap_scaffold_186-snap.2-T1, initial, 8878, 8932
-recovered snap_scaffold_186-snap.2-T1, internal, 9699, 9733
-recovered snap_scaffold_186-snap.2-T1, internal, 9875, 9969
Valid prediction for GlimmerHMM_glimmerT_61469-T1
Couldn't classify 9936, 9969
Sorry, prediction GeneMark_model.106872_t fails validation.
(ATG)	 TG	6762-6781	GT	GGG
(GTC)	 AG	6934-7140	GT	AAG
(ACA)	 AG	7165-7308	GT	GGG
(GCT)	 AG	7332-7355	GT	AGG
(ATC)	 AG	7509-7535	GT	AGG
(AGA)	 AG	9773-9793	GC	GAG
(GAT)	 AG	9936-9969	GT	CGG
-recovered GeneMark_model.106872_t, initial, 6762, 6781
-recovered GeneMark_model.106872_t, internal, 6934, 7140
-recovered GeneMark_model.106872_t, internal, 7165, 7308
-recovered GeneMark_model.106872_t, internal, 7332, 7355
-recovered GeneMark_model.106872_t, internal, 7509, 7535
-recovered GeneMark_model.106872_t, internal, 9773, 9793
-recovered GeneMark_model.106872_t, internal, 9936, 9969
Valid prediction for Augustus_model.g40881.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40880.t1
Couldn't classify 1767, 1862
Sorry, prediction snap_scaffold_186-snap.1-T1 fails validation.
(GAA)	 AG	1767-1862	GT	CGG
(CCC)	 AG	2774-3340	AA	GAA
-recovered snap_scaffold_186-snap.1-T1, terminal, 2774, 3340
-recovered snap_scaffold_186-snap.1-T1, internal, 1767, 1862
Valid prediction for GeneMark_model.106871_t
Valid prediction for GlimmerHMM_glimmerT_61470-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 10089
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support