-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1859

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1460, 1534
Sorry, prediction snap_scaffold_1859-snap.2-T1 fails validation.
(ATG)	 TG	708-1055	GT	GTG
(TAC)	 AG	1460-1534	GT	ACG
-recovered snap_scaffold_1859-snap.2-T1, initial, 708, 1055
-recovered snap_scaffold_1859-snap.2-T1, internal, 1460, 1534
Couldn't classify 36, 45
Couldn't classify 1035, 1053
Sorry, prediction GeneMark_model.109804_t fails validation.
(AAA)	 AG	36-45	GT	CTG
(GGT)	 AG	236-257	GT	GAG
(CTG)	 AG	290-386	GT	GGG
(AAG)	 AG	417-483	GT	GTG
(CCA)	 AG	652-704	GT	AGG
(AGC)	 AG	725-906	GT	GAG
(CGC)	 AG	1035-1053	GT	GAG
-recovered GeneMark_model.109804_t, terminal, 236, 257
-recovered GeneMark_model.109804_t, internal, 36, 45
-recovered GeneMark_model.109804_t, internal, 236, 257
-recovered GeneMark_model.109804_t, internal, 290, 386
-recovered GeneMark_model.109804_t, internal, 417, 483
-recovered GeneMark_model.109804_t, internal, 652, 704
-recovered GeneMark_model.109804_t, internal, 725, 906
-recovered GeneMark_model.109804_t, internal, 1035, 1053
Valid prediction for snap_scaffold_1859-snap.1-T1
add_exon() Sorry, snap_scaffold_1859-snap.1-T1 290-473-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1849
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support