-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1858

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1684, 1842
Sorry, prediction GeneMark_model.109803_t fails validation.
(ATG)	 AC	1024-1040	GT	CAG
(AGA)	 AG	1324-1522	GC	ATG
(AGA)	 AG	1545-1657	GT	AGG
(GAG)	 AG	1684-1842	GT	GGG
-recovered GeneMark_model.109803_t, initial, 1024, 1040
-recovered GeneMark_model.109803_t, internal, 1324, 1522
-recovered GeneMark_model.109803_t, internal, 1545, 1657
-recovered GeneMark_model.109803_t, internal, 1684, 1842

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1607, 1702
Sorry, prediction GeneMark_model.109802_t fails validation.
(ATG)	 AC	1163-1181	GT	CAG
(CTG)	 AG	1446-1470	GT	AAG
(GGA)	 AG	1493-1549	GT	GGG
(AGA)	 AG	1607-1702	GT	GGG
-recovered GeneMark_model.109802_t, initial, 1163, 1181
-recovered GeneMark_model.109802_t, internal, 1446, 1470
-recovered GeneMark_model.109802_t, internal, 1493, 1549
-recovered GeneMark_model.109802_t, internal, 1607, 1702

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1851
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support