-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1857

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1857-snap.2-T1
Valid prediction for snap_scaffold_1857-snap.1-T1
Couldn't classify 125, 160
Sorry, prediction GeneMark_model.109801_t fails validation.
(GAG)	 AG	125-160	GT	AGG
(GAG)	 AG	189-242	GT	AGG
(GAG)	 AG	279-293	GT	GAG
(GGA)	 AG	318-338	GT	GAG
(AGT)	 AG	363-401	GT	AGG
(GAG)	 AG	430-444	GT	GAG
(AGG)	 AG	467-472	GT	AGG
(TGG)	 AG	502-528	GT	GGG
(AGA)	 AG	549-560	GT	GGG
(GAA)	 AG	593-628	GC	AGG
(GAC)	 AG	675-816	GA	AGG
-recovered GeneMark_model.109801_t, terminal, 675, 816
-recovered GeneMark_model.109801_t, internal, 125, 160
-recovered GeneMark_model.109801_t, internal, 189, 242
-recovered GeneMark_model.109801_t, internal, 279, 293
-recovered GeneMark_model.109801_t, internal, 318, 338
-recovered GeneMark_model.109801_t, internal, 363, 401
-recovered GeneMark_model.109801_t, internal, 430, 444
-recovered GeneMark_model.109801_t, internal, 467, 472
-recovered GeneMark_model.109801_t, internal, 502, 528
-recovered GeneMark_model.109801_t, internal, 549, 560
-recovered GeneMark_model.109801_t, internal, 593, 628

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1853
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support