-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1856

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1363, 1371
Sorry, prediction GeneMark_model.109800_t fails validation.
(ATG)	 AA	811-815	GT	AAG
(GAC)	 AG	1033-1083	GT	GGG
(GAG)	 AG	1104-1118	GT	GGG
(GAG)	 AG	1147-1161	GT	GGG
(GAG)	 AG	1200-1214	GT	GGG
(GAG)	 AG	1255-1269	GT	GGG
(AGA)	 AG	1318-1338	GT	GGG
(TGA)	 AG	1363-1371	GT	GAG
-recovered GeneMark_model.109800_t, initial, 811, 815
-recovered GeneMark_model.109800_t, internal, 1033, 1083
-recovered GeneMark_model.109800_t, internal, 1104, 1118
-recovered GeneMark_model.109800_t, internal, 1147, 1161
-recovered GeneMark_model.109800_t, internal, 1200, 1214
-recovered GeneMark_model.109800_t, internal, 1255, 1269
-recovered GeneMark_model.109800_t, internal, 1318, 1338
-recovered GeneMark_model.109800_t, internal, 1363, 1371

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1855
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support