-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1855

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62866-T1
Couldn't classify 29, 96
Couldn't classify 1023, 1849
Sorry, prediction GeneMark_model.109799_t fails validation.
(AAT)	 AG	29-96	GT	TTG
(GGC)	 AG	1023-1849	GT	AGG
-recovered GeneMark_model.109799_t, internal, 29, 96
-recovered GeneMark_model.109799_t, internal, 1023, 1849
Valid prediction for snap_scaffold_1855-snap.1-T1
Couldn't classify 1058, 1857
Sorry, prediction Augustus_model.g41852.t1 fails validation.
(ATG)	 TC	1058-1857		TG

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1857
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support