-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1853

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 166, 276
Sorry, prediction GeneMark_model.109796_t fails validation.
(GGA)	 AG	166-276	GT	GAG
(GTC)	 AG	442-573	GT	GAG
-recovered GeneMark_model.109796_t, terminal, 442, 573
-recovered GeneMark_model.109796_t, internal, 166, 276
-recovered GeneMark_model.109796_t, internal, 442, 573
Valid prediction for GlimmerHMM_glimmerT_62864-T1
Couldn't classify 166, 276
Couldn't classify 1313, 1321
Sorry, prediction snap_scaffold_1853-snap.1-T1 fails validation.
(GGA)	 AG	166-276	GT	GAG
(GTC)	 AG	442-528	GT	AGG
(AGC)	 AG	1313-1321	GT	AAG
-recovered snap_scaffold_1853-snap.1-T1, internal, 166, 276
-recovered snap_scaffold_1853-snap.1-T1, internal, 442, 528
-recovered snap_scaffold_1853-snap.1-T1, internal, 1313, 1321
Couldn't classify 166, 276
Sorry, prediction Augustus_model.g41851.t1 fails validation.
(GGA)	 AG	166-276	GT	GAG
(TGG)	 AG	421-569	GT	CAG
(AGC)	 AG	1313-1325	GT	AAG
-recovered Augustus_model.g41851.t1, terminal, 1313, 1325
-recovered Augustus_model.g41851.t1, internal, 166, 276
-recovered Augustus_model.g41851.t1, internal, 421, 569
-recovered Augustus_model.g41851.t1, internal, 1313, 1325

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 340, 553
Sorry, prediction GlimmerHMM_glimmerT_62865-T1 fails validation.
(GGA)	 AG	340-553	GT	CAG
(GAA)	 AG	1155-1274	TA	AGT
-recovered GlimmerHMM_glimmerT_62865-T1, terminal, 1155, 1274
-recovered GlimmerHMM_glimmerT_62865-T1, internal, 340, 553
Couldn't classify 358, 582
Sorry, prediction GeneMark_model.109797_t fails validation.
(AGG)	 AG	358-582	GT	CAG
(GGG)	 AG	666-678	GT	AGG
(GGC)	 AG	702-718	GT	GGG
(GAC)	 AG	946-1054	CG	AGC
-recovered GeneMark_model.109797_t, terminal, 946, 1054
-recovered GeneMark_model.109797_t, internal, 358, 582
-recovered GeneMark_model.109797_t, internal, 666, 678
-recovered GeneMark_model.109797_t, internal, 702, 718

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1860
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support