-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1851

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 618, 713
Couldn't classify 1568, 1576
Sorry, prediction GeneMark_model.109794_t fails validation.
(AAG)	 AG	618-713	GT	AGG
(GCC)	 AG	770-812	GT	AGG
(CGT)	 AG	1153-1420	GT	CGG
(TGT)	 AG	1460-1480	GT	CGG
(TGT)	 AG	1568-1576	GT	CGG
-recovered GeneMark_model.109794_t, internal, 618, 713
-recovered GeneMark_model.109794_t, internal, 770, 812
-recovered GeneMark_model.109794_t, internal, 1153, 1420
-recovered GeneMark_model.109794_t, internal, 1460, 1480
-recovered GeneMark_model.109794_t, internal, 1568, 1576
Valid prediction for GlimmerHMM_glimmerT_62862-T1
Couldn't classify 477, 534
Sorry, prediction Augustus_model.g41850.t1 fails validation.
(GCT)	 AG	477-534	GT	CAG
(ACA)	 AG	703-812	GT	AGG
(CGT)	 AG	1153-1408	GT	CGG
(AAG)	 AG	1798-1807	CA	GAC
-recovered Augustus_model.g41850.t1, terminal, 1798, 1807
-recovered Augustus_model.g41850.t1, internal, 477, 534
-recovered Augustus_model.g41850.t1, internal, 703, 812
-recovered Augustus_model.g41850.t1, internal, 1153, 1408
Couldn't classify 1153, 1841
Sorry, prediction snap_scaffold_1851-snap.1-T1 fails validation.
(ATG)	 CA	440-463	GT	TGG
(AAG)	 AG	618-713	GT	AGG
(GTA)	 AG	734-812	GT	AGG
(CGT)	 AG	1153-1841	GT	AAG
-recovered snap_scaffold_1851-snap.1-T1, initial, 440, 463
-recovered snap_scaffold_1851-snap.1-T1, internal, 618, 713
-recovered snap_scaffold_1851-snap.1-T1, internal, 734, 812
-recovered snap_scaffold_1851-snap.1-T1, internal, 1153, 1841

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62863-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1866
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support