-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1850

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 66
Sorry, prediction GeneMark_model.109793_t fails validation.
(AGA)	 AG	34-66	GT	GGG
(AGA)	 AG	96-122	GT	GAG
(AGA)	 AG	146-196	GT	GGG
(AGG)	 AG	230-238	GT	GGG
(AGA)	 AG	268-306	GT	GGG
(AGG)	 AG	330-374	GT	GGG
(AGG)	 AG	408-416	GT	GGG
(AGG)	 AG	450-458	GT	GGG
(AGG)	 AG	482-505	GT	AGG
(ATA)	 AG	531-534	CG	AGC
-recovered GeneMark_model.109793_t, terminal, 531, 534
-recovered GeneMark_model.109793_t, internal, 34, 66
-recovered GeneMark_model.109793_t, internal, 96, 122
-recovered GeneMark_model.109793_t, internal, 146, 196
-recovered GeneMark_model.109793_t, internal, 230, 238
-recovered GeneMark_model.109793_t, internal, 268, 306
-recovered GeneMark_model.109793_t, internal, 330, 374
-recovered GeneMark_model.109793_t, internal, 408, 416
-recovered GeneMark_model.109793_t, internal, 450, 458
-recovered GeneMark_model.109793_t, internal, 482, 505

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1867
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support