-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_185 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 9602, 9726 Sorry, prediction GlimmerHMM_glimmerT_61468-T1 fails validation. (ATG) AC 3885-3901 GT AAG (AGA) AG 4774-4849 GT AGG (TTG) AG 5931-6124 GT GGG (GTG) AG 8462-8516 GT AGG (GGT) AG 9266-9345 GT GGG (TCT) AG 9602-9726 GT AGG -recovered GlimmerHMM_glimmerT_61468-T1, initial, 3885, 3901 -recovered GlimmerHMM_glimmerT_61468-T1, internal, 4774, 4849 -recovered GlimmerHMM_glimmerT_61468-T1, internal, 5931, 6124 -recovered GlimmerHMM_glimmerT_61468-T1, internal, 8462, 8516 -recovered GlimmerHMM_glimmerT_61468-T1, internal, 9266, 9345 -recovered GlimmerHMM_glimmerT_61468-T1, internal, 9602, 9726 Valid prediction for Augustus_model.g40878.t1 Couldn't classify 9602, 9726 Sorry, prediction Augustus_model.g40879.t1 fails validation. (ATG) CC 8318-8343 GT AGG (GTG) AG 8462-8516 GT AGG (GGT) AG 9266-9345 GT GGG (TCT) AG 9602-9726 GT AGG -recovered Augustus_model.g40879.t1, initial, 8318, 8343 -recovered Augustus_model.g40879.t1, internal, 8462, 8516 -recovered Augustus_model.g40879.t1, internal, 9266, 9345 -recovered Augustus_model.g40879.t1, internal, 9602, 9726 Couldn't classify 780, 794 Sorry, prediction GeneMark_model.106864_t fails validation. (CTG) AG 780-794 GT AGG (CTG) AG 923-987 GT GGG (GGG) AG 1015-1023 GT AGG (AGA) AG 1045-1098 GT GGG (GGG) AG 1119-1175 GT AGG (AGG) AG 1198-1314 GT GAG (TGA) AG 1361-1393 GT AGG (AGG) AG 1414-1437 GT GAG (GAG) AG 1460-1471 GT GAG (TGG) AG 1506-1521 GA AGG -recovered GeneMark_model.106864_t, terminal, 1506, 1521 -recovered GeneMark_model.106864_t, internal, 780, 794 -recovered GeneMark_model.106864_t, internal, 923, 987 -recovered GeneMark_model.106864_t, internal, 1015, 1023 -recovered GeneMark_model.106864_t, internal, 1045, 1098 -recovered GeneMark_model.106864_t, internal, 1119, 1175 -recovered GeneMark_model.106864_t, internal, 1198, 1314 -recovered GeneMark_model.106864_t, internal, 1361, 1393 -recovered GeneMark_model.106864_t, internal, 1414, 1437 -recovered GeneMark_model.106864_t, internal, 1460, 1471 Couldn't classify 933, 1175 Couldn't classify 9602, 9726 Sorry, prediction snap_scaffold_185-snap.2-T1 fails validation. (ATT) AG 933-1175 GT AGG (TTG) AG 5931-6134 GT GGG (GCT) AG 6787-6882 GT GGG (AAC) AG 8475-8516 GT AGG (GGT) AG 9266-9345 GT GGG (TCT) AG 9602-9726 GT AGG -recovered snap_scaffold_185-snap.2-T1, internal, 933, 1175 -recovered snap_scaffold_185-snap.2-T1, internal, 5931, 6134 -recovered snap_scaffold_185-snap.2-T1, internal, 6787, 6882 -recovered snap_scaffold_185-snap.2-T1, internal, 8475, 8516 -recovered snap_scaffold_185-snap.2-T1, internal, 9266, 9345 -recovered snap_scaffold_185-snap.2-T1, internal, 9602, 9726 Valid prediction for GeneMark_model.106868_t Couldn't classify 10050, 10068 Sorry, prediction GeneMark_model.106870_t fails validation. (ATG) AA 9140-9145 GT CTG (GGT) AG 9266-9345 GT GGG (TCT) AG 9602-9726 GT AGG (GTC) AG 10050-10068 GT AGG -recovered GeneMark_model.106870_t, initial, 9140, 9145 -recovered GeneMark_model.106870_t, internal, 9266, 9345 -recovered GeneMark_model.106870_t, internal, 9602, 9726 -recovered GeneMark_model.106870_t, internal, 10050, 10068 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 9611, 9715 Sorry, prediction Augustus_model.g40877.t1 fails validation. (ATG) AG 9206-9343 GT AGG (AAG) AG 9611-9715 GT AGG -recovered Augustus_model.g40877.t1, initial, 9206, 9343 -recovered Augustus_model.g40877.t1, internal, 9206, 9343 -recovered Augustus_model.g40877.t1, internal, 9611, 9715 Valid prediction for GeneMark_model.106869_t Couldn't classify 9611, 9715 Sorry, prediction snap_scaffold_185-snap.1-T1 fails validation. (ATG) GG 6311-6561 GT GGG (AAT) AG 9166-9343 GT AGG (AAG) AG 9611-9715 GT AGG -recovered snap_scaffold_185-snap.1-T1, initial, 6311, 6561 -recovered snap_scaffold_185-snap.1-T1, internal, 9166, 9343 -recovered snap_scaffold_185-snap.1-T1, internal, 9611, 9715 Couldn't classify 1824, 2147 Sorry, prediction snap_scaffold_185-snap.3-T1 fails validation. (AAG) AG 1824-2147 GT AGG (GCA) AG 4116-4174 GG GAG add_exon() Sorry, snap_scaffold_185-snap.3-T1 1824-2147-terminal-1 is invalid. -recovered snap_scaffold_185-snap.3-T1, terminal, 1824, 2147 -recovered snap_scaffold_185-snap.3-T1, terminal, 4116, 4174 -recovered snap_scaffold_185-snap.3-T1, internal, 1824, 2147 Valid prediction for GlimmerHMM_glimmerT_61467-T1 Valid prediction for GeneMark_model.106867_t Valid prediction for GeneMark_model.106865_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3790, rend_intergenic: 933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 9726, rend_intergenic: 5927 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 10100 -exon list size: 76 building trellis 1.3 2.6 3.8 5.1 6.4 7.7 9.0 10.3 11.5 12.8 14.1 15.4 16.7 17.9 19.2 20.5 21.8 23.1 24.4 25.6 26.9 28.2 29.5 30.8 32.1 33.3 34.6 35.9 37.2 38.5 39.7 41.0 42.3 43.6 44.9 46.2 47.4 48.7 50.0 51.3 52.6 53.8 55.1 56.4 57.7 59.0 60.3 61.5 62.8 64.1 65.4 66.7 67.9 69.2 70.5 71.8 73.1 74.4 75.6 76.9 78.2 79.5 80.8 82.1 83.3 84.6 85.9 87.2 88.5 89.7 91.0 92.3 93.6 94.9 96.2 97.4 98.7 -found 3 predictions from path traversal Error with prediction: snap lend_intergenic: 3790, rend_intergenic: 933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 9726, rend_intergenic: 5927 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 3 predictions persist after filtering for low support